Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PT966_RS15505 Genome accession   NZ_CP117945
Coordinates   3127058..3127702 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain ZY1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3122058..3132702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT966_RS15470 (PT966_15470) - 3123243..3123674 (+) 432 WP_044052951.1 Na(+)/H(+) antiporter subunit B -
  PT966_RS15475 (PT966_15475) - 3123674..3124015 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  PT966_RS15480 (PT966_15480) - 3124008..3125489 (+) 1482 WP_275065308.1 Na+/H+ antiporter subunit D -
  PT966_RS15485 (PT966_15485) - 3125495..3125971 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  PT966_RS15490 (PT966_15490) - 3125971..3126255 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  PT966_RS15495 (PT966_15495) mnhG 3126239..3126613 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  PT966_RS15500 (PT966_15500) - 3126653..3127036 (-) 384 WP_044052949.1 hotdog fold thioesterase -
  PT966_RS15505 (PT966_15505) comA 3127058..3127702 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  PT966_RS15510 (PT966_15510) - 3127783..3130089 (-) 2307 Protein_2991 sensor histidine kinase -
  PT966_RS15515 (PT966_15515) comX 3130108..3130284 (-) 177 WP_044052947.1 competence pheromone ComX -
  PT966_RS15520 (PT966_15520) - 3130299..3131195 (-) 897 WP_017419425.1 polyprenyl synthetase family protein -
  PT966_RS15525 (PT966_15525) degQ 3131326..3131466 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  PT966_RS15530 (PT966_15530) - 3131932..3132273 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=788443 PT966_RS15505 WP_003152052.1 3127058..3127702(-) (comA) [Bacillus velezensis strain ZY1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=788443 PT966_RS15505 WP_003152052.1 3127058..3127702(-) (comA) [Bacillus velezensis strain ZY1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864