Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PT966_RS12000 Genome accession   NZ_CP117945
Coordinates   2480321..2482051 (-) Length   576 a.a.
NCBI ID   WP_003153174.1    Uniprot ID   -
Organism   Bacillus velezensis strain ZY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2475321..2487051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT966_RS11975 (PT966_11975) - 2475744..2475956 (+) 213 WP_003153183.1 spore germination protein -
  PT966_RS11980 (PT966_11980) - 2476082..2476294 (+) 213 WP_014305392.1 spore germination protein -
  PT966_RS11985 (PT966_11985) alr 2476469..2477650 (+) 1182 WP_117614613.1 alanine racemase -
  PT966_RS11990 (PT966_11990) spo0A 2477796..2478596 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  PT966_RS11995 (PT966_11995) spoIVB 2478877..2480157 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  PT966_RS12000 (PT966_12000) recN 2480321..2482051 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  PT966_RS12005 (PT966_12005) argR 2482083..2482532 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  PT966_RS12010 (PT966_12010) - 2482629..2483474 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -
  PT966_RS12015 (PT966_12015) dxs 2483471..2485372 (-) 1902 WP_024085592.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PT966_RS12020 (PT966_12020) - 2485516..2486406 (-) 891 WP_014305396.1 polyprenyl synthetase family protein -
  PT966_RS12025 (PT966_12025) - 2486396..2486650 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64051.85 Da        Isoelectric Point: 4.7301

>NTDB_id=788422 PT966_RS12000 WP_003153174.1 2480321..2482051(-) (recN) [Bacillus velezensis strain ZY1]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELQSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=788422 PT966_RS12000 WP_003153174.1 2480321..2482051(-) (recN) [Bacillus velezensis strain ZY1]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGACGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTACAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATCGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887