Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PT966_RS08340 Genome accession   NZ_CP117945
Coordinates   1641971..1642870 (+) Length   299 a.a.
NCBI ID   WP_048367245.1    Uniprot ID   -
Organism   Bacillus velezensis strain ZY1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1636971..1647870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT966_RS08320 (PT966_08320) - 1637662..1639365 (+) 1704 WP_275065326.1 glycosyl transferase -
  PT966_RS08325 (PT966_08325) - 1639362..1639643 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  PT966_RS08330 (PT966_08330) sucC 1639818..1640975 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  PT966_RS08335 (PT966_08335) sucD 1641004..1641906 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  PT966_RS08340 (PT966_08340) dprA 1641971..1642870 (+) 900 WP_048367245.1 DNA-processing protein DprA Machinery gene
  PT966_RS08345 (PT966_08345) topA 1643052..1645127 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  PT966_RS08350 (PT966_08350) trmFO 1645192..1646499 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PT966_RS08355 (PT966_08355) xerC 1646569..1647486 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32872.01 Da        Isoelectric Point: 8.4593

>NTDB_id=788415 PT966_RS08340 WP_048367245.1 1641971..1642870(+) (dprA) [Bacillus velezensis strain ZY1]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRVKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=788415 PT966_RS08340 WP_048367245.1 1641971..1642870(+) (dprA) [Bacillus velezensis strain ZY1]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGAATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGTAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Lactococcus lactis subsp. cremoris KW2

40.502

93.311

0.378