Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6388_RS11070 Genome accession   NZ_CP130895
Coordinates   2101678..2102163 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096678..2107163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS11040 (Q6388_11040) - 2097270..2097778 (-) 509 Protein_2125 pilin -
  Q6388_RS11045 (Q6388_11045) - 2098594..2098712 (-) 119 Protein_2126 pilin -
  Q6388_RS11050 (Q6388_11050) - 2098835..2099155 (-) 321 Protein_2127 pilin -
  Q6388_RS11055 (Q6388_11055) - 2099216..2099599 (-) 384 Protein_2128 pilin -
  Q6388_RS11060 (Q6388_11060) lpxC 2099744..2100667 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6388_RS11065 (Q6388_11065) - 2101161..2101543 (-) 383 Protein_2130 pilin -
  Q6388_RS11070 (Q6388_11070) pilE 2101678..2102163 (-) 486 WP_125121586.1 pilin Machinery gene
  Q6388_RS11075 (Q6388_11075) - 2102220..2102567 (-) 348 Protein_2132 pilin -
  Q6388_RS11080 (Q6388_11080) - 2102620..2103024 (-) 405 Protein_2133 pilin -
  Q6388_RS11085 (Q6388_11085) - 2103159..2103598 (-) 440 Protein_2134 pilin -
  Q6388_RS11090 (Q6388_11090) - 2104124..2104852 (-) 729 WP_353114220.1 pilin -
  Q6388_RS11095 (Q6388_11095) pilE 2104776..2105093 (-) 318 WP_003697861.1 pilin Machinery gene
  Q6388_RS11100 (Q6388_11100) - 2105423..2105614 (+) 192 WP_014580443.1 hypothetical protein -
  Q6388_RS11105 (Q6388_11105) - 2105678..2106367 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  Q6388_RS11110 (Q6388_11110) - 2106364..2107107 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=788398 Q6388_RS11070 WP_125121586.1 2101678..2102163(-) (pilE) [Neisseria gonorrhoeae strain NJ1913940]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=788398 Q6388_RS11070 WP_125121586.1 2101678..2102163(-) (pilE) [Neisseria gonorrhoeae strain NJ1913940]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453