Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PUB92_RS19470 Genome accession   NZ_CP117919
Coordinates   4278018..4279457 (-) Length   479 a.a.
NCBI ID   WP_010635929.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain PSKL.DM     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4273018..4284457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUB92_RS19440 (PUB92_19440) dagF 4273293..4274033 (+) 741 WP_274181746.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  PUB92_RS19445 (PUB92_19445) - 4274138..4276042 (+) 1905 WP_274181747.1 BglG family transcription antiterminator -
  PUB92_RS19450 (PUB92_19450) npr 4276058..4276330 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  PUB92_RS19455 (PUB92_19455) rapZ 4276351..4277217 (-) 867 WP_005305946.1 RNase adapter RapZ -
  PUB92_RS19460 (PUB92_19460) ptsN 4277260..4277706 (-) 447 WP_010635930.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PUB92_RS19465 (PUB92_19465) hpf 4277709..4277996 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  PUB92_RS19470 (PUB92_19470) rpoN/rpoN1 4278018..4279457 (-) 1440 WP_010635929.1 RNA polymerase factor sigma-54 Machinery gene
  PUB92_RS19475 (PUB92_19475) lptB 4279523..4280248 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  PUB92_RS19480 (PUB92_19480) lptA 4280252..4280779 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  PUB92_RS19485 (PUB92_19485) lptC 4280766..4281326 (-) 561 WP_274181748.1 LPS export ABC transporter periplasmic protein LptC -
  PUB92_RS19490 (PUB92_19490) kdsC 4281323..4281877 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  PUB92_RS19495 (PUB92_19495) - 4281877..4282872 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  PUB92_RS19500 (PUB92_19500) mlaF 4283080..4283880 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53848.82 Da        Isoelectric Point: 4.3584

>NTDB_id=788360 PUB92_RS19470 WP_010635929.1 4278018..4279457(-) (rpoN/rpoN1) [Aeromonas dhakensis strain PSKL.DM]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=788360 PUB92_RS19470 WP_010635929.1 4278018..4279457(-) (rpoN/rpoN1) [Aeromonas dhakensis strain PSKL.DM]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GTGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGATGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGTGAGGATGTCGAGGTGGAGCTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATTCAGCAGCTGGAGCCGCGGCCCGGTAATGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCGG
ACTCGGCCCCGCGCATCCGGGTCAATGAGACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486