Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6382_RS08240 Genome accession   NZ_CP130894
Coordinates   1574544..1575029 (-) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1914215     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569544..1580029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6382_RS08210 (Q6382_08210) - 1570136..1570644 (-) 509 Protein_1571 pilin -
  Q6382_RS08215 (Q6382_08215) - 1571460..1571578 (-) 119 Protein_1572 pilin -
  Q6382_RS08220 (Q6382_08220) - 1571701..1572021 (-) 321 Protein_1573 pilin -
  Q6382_RS08225 (Q6382_08225) - 1572082..1572465 (-) 384 Protein_1574 pilin -
  Q6382_RS08230 (Q6382_08230) lpxC 1572610..1573533 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6382_RS08235 (Q6382_08235) - 1574027..1574409 (-) 383 Protein_1576 pilin -
  Q6382_RS08240 (Q6382_08240) pilE 1574544..1575029 (-) 486 WP_125121586.1 pilin Machinery gene
  Q6382_RS08245 (Q6382_08245) - 1575086..1575433 (-) 348 Protein_1578 pilin -
  Q6382_RS08250 (Q6382_08250) - 1575486..1575879 (-) 394 Protein_1579 pilin -
  Q6382_RS08255 (Q6382_08255) - 1576014..1576453 (-) 440 Protein_1580 pilin -
  Q6382_RS08260 (Q6382_08260) - 1576979..1577707 (-) 729 WP_353114220.1 pilin -
  Q6382_RS08265 (Q6382_08265) pilE 1577631..1577948 (-) 318 WP_003697861.1 pilin Machinery gene
  Q6382_RS08270 (Q6382_08270) - 1578278..1578469 (+) 192 WP_014580443.1 hypothetical protein -
  Q6382_RS08275 (Q6382_08275) - 1578533..1579222 (-) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  Q6382_RS08280 (Q6382_08280) - 1579219..1579962 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=788304 Q6382_RS08240 WP_125121586.1 1574544..1575029(-) (pilE) [Neisseria gonorrhoeae strain NJ1914215]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=788304 Q6382_RS08240 WP_125121586.1 1574544..1575029(-) (pilE) [Neisseria gonorrhoeae strain NJ1914215]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453