Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PQ460_RS18050 Genome accession   NZ_CP117876
Coordinates   4094687..4095133 (-) Length   148 a.a.
NCBI ID   WP_204825230.1    Uniprot ID   -
Organism   Paenibacillus sp. KACC 21273     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4089687..4100133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ460_RS18025 (PQ460_18025) - 4090423..4090977 (-) 555 WP_274170653.1 GbsR/MarR family transcriptional regulator -
  PQ460_RS18030 (PQ460_18030) - 4091311..4092513 (+) 1203 WP_274170654.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  PQ460_RS18035 (PQ460_18035) - 4092500..4093342 (+) 843 WP_273615286.1 proline/glycine betaine ABC transporter permease -
  PQ460_RS18040 (PQ460_18040) - 4093406..4094341 (+) 936 WP_274170655.1 glycine betaine ABC transporter substrate-binding protein -
  PQ460_RS18045 (PQ460_18045) - 4094474..4094632 (-) 159 WP_161594229.1 hypothetical protein -
  PQ460_RS18050 (PQ460_18050) nucA/comI 4094687..4095133 (-) 447 WP_204825230.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PQ460_RS18055 (PQ460_18055) - 4095325..4097013 (-) 1689 WP_274170656.1 methyl-accepting chemotaxis protein -
  PQ460_RS18060 (PQ460_18060) - 4097449..4098225 (+) 777 WP_273615282.1 sporulation protein -
  PQ460_RS18065 (PQ460_18065) - 4098400..4099161 (-) 762 WP_273615281.1 MBL fold metallo-hydrolase -
  PQ460_RS18070 (PQ460_18070) - 4099279..4099689 (+) 411 WP_274170657.1 Lrp/AsnC family transcriptional regulator -
  PQ460_RS18075 (PQ460_18075) - 4099761..4100078 (+) 318 WP_273615279.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15936.99 Da        Isoelectric Point: 7.8688

>NTDB_id=788211 PQ460_RS18050 WP_204825230.1 4094687..4095133(-) (nucA/comI) [Paenibacillus sp. KACC 21273]
MSSKKIWGFVVTAILAGVIYLVNGHVDLGGILNPNQASNGQADYTLVVPADRYPKTAAHIKDAIAEGHSAICTIDRGGAK
ANRQLSLRGVATKKGYDRDEWPMAMCQEGGEGADIRYIKPSDNRGAGSWIGNQLDNYSDGTRVLFEVK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=788211 PQ460_RS18050 WP_204825230.1 4094687..4095133(-) (nucA/comI) [Paenibacillus sp. KACC 21273]
ATGTCTTCTAAAAAAATATGGGGATTTGTGGTTACTGCGATTCTAGCAGGGGTTATTTATCTAGTGAATGGACATGTTGA
TCTAGGTGGGATACTAAATCCTAACCAAGCATCAAATGGACAAGCTGATTATACCCTTGTTGTGCCTGCTGATCGTTATC
CTAAGACCGCAGCTCACATTAAAGATGCTATAGCAGAAGGACATTCTGCGATCTGTACGATAGATCGTGGGGGCGCCAAA
GCAAATCGTCAGCTATCTTTGCGAGGAGTAGCTACCAAAAAAGGCTATGATCGAGATGAGTGGCCTATGGCAATGTGTCA
GGAAGGTGGAGAAGGTGCAGATATTCGTTATATCAAACCTTCAGATAATCGAGGCGCAGGTTCATGGATAGGTAACCAAT
TAGACAATTATTCAGATGGCACAAGGGTATTATTTGAGGTAAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(54-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.016

82.432

0.486