Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PQ460_RS15300 Genome accession   NZ_CP117876
Coordinates   3508151..3508534 (-) Length   127 a.a.
NCBI ID   WP_273616281.1    Uniprot ID   A0AAX3M9R0
Organism   Paenibacillus sp. KACC 21273     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3503151..3513534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ460_RS15270 (PQ460_15270) rpmF 3503555..3503728 (-) 174 WP_069327428.1 50S ribosomal protein L32 -
  PQ460_RS15275 (PQ460_15275) - 3503789..3504229 (-) 441 WP_273615737.1 DUF177 domain-containing protein -
  PQ460_RS15280 (PQ460_15280) - 3504451..3505671 (+) 1221 WP_274170335.1 nucleotidyltransferase -
  PQ460_RS15285 (PQ460_15285) - 3505694..3506692 (-) 999 WP_274170336.1 S16 family serine protease -
  PQ460_RS15290 (PQ460_15290) coaD 3506812..3507327 (-) 516 WP_274170337.1 pantetheine-phosphate adenylyltransferase -
  PQ460_RS15295 (PQ460_15295) rsmD 3507320..3507904 (-) 585 WP_274170338.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PQ460_RS15300 (PQ460_15300) nucA/comI 3508151..3508534 (-) 384 WP_273616281.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PQ460_RS15305 (PQ460_15305) - 3508986..3509162 (+) 177 WP_274170339.1 YjfB family protein -
  PQ460_RS15310 (PQ460_15310) - 3509306..3510217 (-) 912 WP_274170340.1 SMP-30/gluconolactonase/LRE family protein -
  PQ460_RS15315 (PQ460_15315) - 3510232..3510894 (-) 663 WP_273615731.1 SGNH/GDSL hydrolase family protein -
  PQ460_RS15320 (PQ460_15320) - 3510949..3511728 (-) 780 WP_274170341.1 alpha/beta hydrolase -
  PQ460_RS15325 (PQ460_15325) - 3511916..3512749 (-) 834 WP_204825023.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13953.42 Da        Isoelectric Point: 4.8834

>NTDB_id=788209 PQ460_RS15300 WP_273616281.1 3508151..3508534(-) (nucA/comI) [Paenibacillus sp. KACC 21273]
MSVLFQGEGKIHNTVYAAAAYDYTLTFPTSRYPETADHIKDAIADGHSDVCTIDRDGADQRREDSLKGVPTKSGYDRDEW
PMAMCLEGGTGADIRYVTPSDNRGAGSWVGNQLTKYPDGTKVKFIVQ

Nucleotide


Download         Length: 384 bp        

>NTDB_id=788209 PQ460_RS15300 WP_273616281.1 3508151..3508534(-) (nucA/comI) [Paenibacillus sp. KACC 21273]
ATGTCGGTTTTATTTCAAGGCGAGGGCAAAATACATAATACGGTATACGCAGCAGCAGCCTATGATTACACGCTTACTTT
TCCAACGAGTCGTTACCCTGAAACAGCAGATCATATCAAAGATGCCATTGCAGATGGACATTCTGATGTTTGTACGATTG
ATCGTGATGGAGCAGACCAACGACGTGAAGATTCTTTAAAAGGAGTACCTACTAAGTCCGGTTATGATCGTGATGAATGG
CCAATGGCGATGTGTCTGGAAGGCGGAACAGGAGCAGATATCCGTTATGTGACCCCGTCAGATAATCGTGGAGCAGGTTC
TTGGGTCGGCAACCAACTCACCAAATATCCAGATGGAACCAAAGTGAAATTCATAGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

72.897

84.252

0.614