Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PQ460_RS03570 Genome accession   NZ_CP117876
Coordinates   808326..809693 (+) Length   455 a.a.
NCBI ID   WP_204827247.1    Uniprot ID   -
Organism   Paenibacillus sp. KACC 21273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 803326..814693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ460_RS03550 (PQ460_03550) - 803511..803972 (+) 462 WP_204827244.1 CtsR family transcriptional regulator -
  PQ460_RS03555 (PQ460_03555) - 804000..804524 (+) 525 WP_273616361.1 UvrB/UvrC motif-containing protein -
  PQ460_RS03560 (PQ460_03560) - 804538..805611 (+) 1074 WP_204827245.1 protein arginine kinase -
  PQ460_RS03565 (PQ460_03565) clpC 805632..808127 (+) 2496 WP_273613677.1 ATP-dependent protease ATP-binding subunit ClpC -
  PQ460_RS03570 (PQ460_03570) radA 808326..809693 (+) 1368 WP_204827247.1 DNA repair protein RadA Machinery gene
  PQ460_RS03575 (PQ460_03575) disA 809706..810782 (+) 1077 WP_204827281.1 DNA integrity scanning diadenylate cyclase DisA -
  PQ460_RS03580 (PQ460_03580) pssA 810838..811548 (+) 711 WP_069328328.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  PQ460_RS03585 (PQ460_03585) - 811654..812646 (+) 993 WP_274171823.1 TRAM domain-containing protein -
  PQ460_RS03590 (PQ460_03590) ispD 812774..813472 (+) 699 WP_273613675.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PQ460_RS03595 (PQ460_03595) ispF 813469..813948 (+) 480 WP_274171824.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49532.09 Da        Isoelectric Point: 7.2037

>NTDB_id=788194 PQ460_RS03570 WP_204827247.1 808326..809693(+) (radA) [Paenibacillus sp. KACC 21273]
MAKVKTKFFCTECGYESPKWYGKCPGCQSWNSMVEEKESNVKTQGMNSSLFQTKQKPQAITEIESGKEPRIQTGIGELNR
VLGGGVVPGSLVLVGGDPGIGKSTLLLQTSHALTQAGLRVLYVSGEESVRQTKLRAERLGALSDQLFVLCESNMDLIEEA
IDQLDPHFLVIDSIQTVYQPEVTSAPGSVSQVRECTSRFMRVAKIRGVATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRILRAVKNRFGSTNEMGIFEMHEDGLIEVSNPSELFISERSIGVAGSTVVASMEGTRPMLVELQALVAATHFPS
PRRMGTGVDHNRLSLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSLASSFKDAPTKPDDVIFGEIGLTGE
VRGVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPKGIQLIGVNTVAEALKAALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=788194 PQ460_RS03570 WP_204827247.1 808326..809693(+) (radA) [Paenibacillus sp. KACC 21273]
ATGGCTAAAGTCAAAACCAAGTTTTTTTGTACAGAATGTGGATATGAATCTCCAAAATGGTATGGTAAATGCCCGGGGTG
TCAGTCTTGGAATAGTATGGTGGAAGAAAAAGAAAGCAACGTAAAAACGCAAGGAATGAATTCTTCTTTATTTCAAACCA
AGCAGAAACCACAAGCGATTACTGAAATTGAAAGCGGGAAAGAACCGCGTATTCAGACTGGTATCGGAGAGCTTAACCGC
GTCTTAGGTGGCGGTGTAGTGCCAGGTTCGCTAGTATTAGTAGGTGGAGATCCTGGTATTGGTAAGTCTACGTTGTTATT
ACAAACTTCACATGCACTAACACAAGCAGGGCTACGTGTTCTTTACGTATCAGGAGAAGAATCTGTAAGGCAGACCAAGT
TACGTGCAGAGCGACTTGGAGCATTATCTGATCAGTTATTTGTACTGTGTGAAAGTAATATGGATTTGATCGAGGAAGCG
ATTGATCAATTAGATCCTCATTTTCTAGTGATTGATTCGATACAGACGGTCTATCAACCAGAAGTCACAAGTGCTCCTGG
TAGTGTATCGCAAGTACGGGAATGTACATCACGCTTTATGAGAGTAGCCAAAATTCGTGGTGTCGCTACAGTACTTGTTG
GACATGTTACCAAAGAAGGTGCTATTGCAGGCCCAAGAATGTTGGAGCATATGGTAGACTGTGTTCTTTATTTTGAAGGG
GAACGTCATCATACGTACCGCATATTACGAGCTGTCAAAAACCGCTTTGGCTCAACAAATGAAATGGGTATTTTTGAAAT
GCATGAAGATGGATTGATCGAAGTCTCTAATCCGTCAGAATTATTTATATCAGAACGTTCGATAGGAGTAGCAGGTTCAA
CAGTTGTAGCTAGCATGGAAGGCACACGTCCTATGCTTGTTGAATTACAAGCTCTTGTCGCTGCGACTCATTTTCCTTCT
CCACGGCGGATGGGTACAGGTGTAGATCATAATCGCTTGAGTCTCATTATTGCTGTATTGGAAAAACGAATGGGGATGTT
TTTACAAAATCAAGATGCTTATCTAAACGTAGCCGGTGGGGTTAAACTAGATGAACCTGCGGTAGATTTAGCAATTGCTG
TAAGCTTAGCTTCAAGCTTCAAAGATGCTCCAACCAAACCAGATGATGTGATCTTTGGAGAAATTGGATTGACTGGAGAA
GTTCGCGGAGTATCTCGCGCAGAGCAGCGTGTGAAAGAAGCAGCAAAATTAGGATTTAAACGAGTGATTTTACCAGAAAA
AAGTCTGAAAGGATGGAAGCATCCTAAAGGTATTCAATTAATTGGAGTTAATACGGTAGCAGAAGCATTAAAGGCTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-427)

AAA domain (AAA_25)

(75-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.544

100

0.677
  radA Streptococcus pneumoniae Rx1

60.089

99.121

0.596
  radA Streptococcus pneumoniae D39

60.089

99.121

0.596
  radA Streptococcus pneumoniae R6

60.089

99.121

0.596
  radA Streptococcus pneumoniae TIGR4

60.089

99.121

0.596
  radA Streptococcus mitis NCTC 12261

60.089

99.121

0.596
  radA Streptococcus mitis SK321

59.867

99.121

0.593