Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q6379_RS11450 Genome accession   NZ_CP130892
Coordinates   2152411..2153379 (-) Length   322 a.a.
NCBI ID   WP_050169390.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147411..2158379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS11425 (Q6379_11425) - 2147953..2149260 (-) 1308 WP_047918067.1 YadA-like family protein -
  Q6379_RS11430 (Q6379_11430) - 2149246..2149899 (+) 654 WP_304672932.1 IS1595 family transposase -
  Q6379_RS11435 (Q6379_11435) - 2149934..2150692 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  Q6379_RS11440 (Q6379_11440) - 2150776..2151402 (-) 627 WP_003690385.1 FmdE family protein -
  Q6379_RS11445 (Q6379_11445) - 2151447..2152421 (-) 975 WP_003690387.1 iron chelate uptake ABC transporter family permease subunit -
  Q6379_RS11450 (Q6379_11450) ceuB 2152411..2153379 (-) 969 WP_050169390.1 ABC transporter permease Machinery gene
  Q6379_RS11455 (Q6379_11455) - 2153398..2153589 (-) 192 WP_162098494.1 hypothetical protein -
  Q6379_RS11460 (Q6379_11460) - 2153607..2154572 (-) 966 WP_003690393.1 siderophore ABC transporter substrate-binding protein -
  Q6379_RS11465 (Q6379_11465) fetA 2154724..2156865 (-) 2142 WP_304672933.1 TonB-dependent siderophore receptor FetA/FrpB -
  Q6379_RS11470 (Q6379_11470) - 2157371..2157661 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34396.70 Da        Isoelectric Point: 10.5988

>NTDB_id=788187 Q6379_RS11450 WP_050169390.1 2152411..2153379(-) (ceuB) [Neisseria gonorrhoeae strain NJ204705]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGSSMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=788187 Q6379_RS11450 WP_050169390.1 2152411..2153379(-) (ceuB) [Neisseria gonorrhoeae strain NJ204705]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCTCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGATGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388