Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PRJ39_RS05970 Genome accession   NZ_CP117873
Coordinates   1350698..1351966 (-) Length   422 a.a.
NCBI ID   WP_091797845.1    Uniprot ID   A0A1H3LI43
Organism   Lysobacter enzymogenes strain Lj46     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345698..1356966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRJ39_RS05950 (PRJ39_05720) - 1347880..1348956 (+) 1077 WP_394540070.1 Nudix family hydrolase -
  PRJ39_RS05955 - 1349104..1349157 (-) 54 Protein_1185 DUF6053 domain-containing protein -
  PRJ39_RS05960 (PRJ39_05725) coaE 1349175..1349786 (-) 612 WP_394540071.1 dephospho-CoA kinase -
  PRJ39_RS05965 (PRJ39_05730) - 1349791..1350678 (-) 888 WP_091797843.1 A24 family peptidase -
  PRJ39_RS05970 (PRJ39_05735) pilC 1350698..1351966 (-) 1269 WP_091797845.1 type II secretion system F family protein Machinery gene
  PRJ39_RS05975 (PRJ39_05740) pilB 1351970..1353697 (-) 1728 WP_091797848.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PRJ39_RS05980 (PRJ39_05745) - 1353775..1355481 (-) 1707 WP_394540072.1 phosphoethanolamine transferase -
  PRJ39_RS05985 (PRJ39_05750) - 1355540..1355980 (-) 441 WP_091797853.1 pilin -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46030.55 Da        Isoelectric Point: 10.3218

>NTDB_id=788149 PRJ39_RS05970 WP_091797845.1 1350698..1351966(-) (pilC) [Lysobacter enzymogenes strain Lj46]
MSATRSATRAAAKTAPQVRRENPLALFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKAKPLFGASGKRI
TPSDIAIFSRQIATMLKSGVPIVTSLEIIGEGHKNPRMKTLLNAVRSDLESGLSLYEAMSRHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALYYPATVIAVAILVSAILLVFVVPQFKATFQSFGADLPAFTLMVIGMSEFMIQ
WWWAILILVIGAGVAFIMAKNRSLAFSHFIDRMMLKLPIVGQILHNAAIARFARTLAVSFRAGVPLVEALDTVAGATGNV
VYEKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVIAMYLPIFKLAATI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=788149 PRJ39_RS05970 WP_091797845.1 1350698..1351966(-) (pilC) [Lysobacter enzymogenes strain Lj46]
ATGTCCGCGACCCGTTCCGCCACTCGCGCCGCCGCCAAGACCGCCCCCCAGGTCCGCCGCGAAAATCCCCTGGCCCTGTT
CGTATGGCAGGGCACCGACAAACGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCG
AGCTGCGCCGCCAGGGCATCACCCCGACCGTGGTCAAGCCCAAGGCCAAGCCGCTGTTCGGCGCCTCGGGCAAGCGCATC
ACTCCGAGCGACATCGCCATCTTCAGCCGCCAGATCGCGACCATGCTGAAGTCCGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGACCCTGCTCAACGCCGTGCGCTCGGACCTGGAAAGCGGCCTGT
CGCTGTACGAGGCGATGTCCCGGCACCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCG
GGCGTGCTCGAAACCGTGCTGGACACGGTGGCGACCTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGC
CCTGTACTACCCGGCCACCGTCATCGCTGTGGCGATCCTGGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGCAGTTCA
AGGCGACGTTCCAGAGCTTCGGCGCCGACCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGAGTTCATGATCCAG
TGGTGGTGGGCCATCCTCATCCTGGTGATCGGCGCCGGCGTCGCCTTCATCATGGCCAAGAACCGCTCGCTGGCGTTCTC
CCACTTCATCGACCGGATGATGCTCAAGCTGCCGATCGTGGGCCAGATCCTGCACAACGCGGCCATCGCCCGCTTCGCCC
GCACCCTGGCGGTCAGCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGACACCGTCGCCGGCGCGACCGGCAACGTA
GTCTACGAAAAGGCCGTGCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTGTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CCGAATTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGCTGGAACCGTTGATCATGATCATCCTG
GGCGTCATCGTCGGCGGCATGGTCATCGCGATGTATCTGCCGATCTTCAAGCTGGCCGCCACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3LI43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.941

95.735

0.536
  pilC Acinetobacter baylyi ADP1

53.695

96.209

0.517
  pilC Pseudomonas stutzeri DSM 10701

54.271

94.313

0.512
  pilC Acinetobacter baumannii D1279779

51.724

96.209

0.498
  pilG Neisseria gonorrhoeae MS11

43.25

94.787

0.41
  pilG Neisseria meningitidis 44/76-A

43.25

94.787

0.41
  pilC Vibrio campbellii strain DS40M4

41.422

96.682

0.4
  pilC Vibrio cholerae strain A1552

40.796

95.261

0.389