Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6384_RS03835 Genome accession   NZ_CP130890
Coordinates   720572..721057 (+) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208756     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 715572..726057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6384_RS03795 (Q6384_03795) - 715628..716371 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  Q6384_RS03800 (Q6384_03800) - 716368..717057 (+) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  Q6384_RS03805 (Q6384_03805) - 717121..717312 (-) 192 WP_014580443.1 hypothetical protein -
  Q6384_RS03810 (Q6384_03810) pilE 717642..717959 (+) 318 WP_003697861.1 pilin Machinery gene
  Q6384_RS03815 (Q6384_03815) - 717925..718611 (+) 687 WP_143824052.1 pilin -
  Q6384_RS03820 (Q6384_03820) - 719137..719576 (+) 440 Protein_746 pilin -
  Q6384_RS03825 (Q6384_03825) - 719711..720115 (+) 405 Protein_747 pilin -
  Q6384_RS03830 (Q6384_03830) - 720168..720515 (+) 348 Protein_748 pilin -
  Q6384_RS03835 (Q6384_03835) pilE 720572..721057 (+) 486 WP_125121586.1 pilin Machinery gene
  Q6384_RS03840 (Q6384_03840) - 721192..721574 (+) 383 Protein_750 pilin -
  Q6384_RS03845 (Q6384_03845) lpxC 722068..722991 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6384_RS03850 (Q6384_03850) - 723136..723519 (+) 384 Protein_752 pilin -
  Q6384_RS03855 (Q6384_03855) pilE 723544..723900 (+) 357 WP_277494056.1 pilin Machinery gene
  Q6384_RS03860 (Q6384_03860) - 724023..724141 (+) 119 Protein_754 pilin -
  Q6384_RS03865 (Q6384_03865) - 724957..725459 (+) 503 Protein_755 pilin -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=788008 Q6384_RS03835 WP_125121586.1 720572..721057(+) (pilE) [Neisseria gonorrhoeae strain NJ208756]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=788008 Q6384_RS03835 WP_125121586.1 720572..721057(+) (pilE) [Neisseria gonorrhoeae strain NJ208756]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453