Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PO845_RS00300 Genome accession   NZ_CP117857
Coordinates   45547..45837 (-) Length   96 a.a.
NCBI ID   WP_170936346.1    Uniprot ID   -
Organism   Bacillus velezensis strain PT4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40547..50837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO845_RS00260 (PO845_00260) darA 40564..40893 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  PO845_RS00265 (PO845_00265) - 40906..41346 (+) 441 WP_004264730.1 DUF327 family protein -
  PO845_RS00270 (PO845_00270) holB 41358..42347 (+) 990 WP_224462943.1 DNA polymerase III subunit delta' -
  PO845_RS00275 (PO845_00275) ricT 42350..43177 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  PO845_RS00280 (PO845_00280) yabA 43192..43551 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  PO845_RS00285 (PO845_00285) - 43612..44355 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PO845_RS00290 (PO845_00290) - 44342..44641 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  PO845_RS00295 (PO845_00295) rsmI 44616..45497 (+) 882 WP_031379323.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PO845_RS00300 (PO845_00300) abrB 45547..45837 (-) 291 WP_170936346.1 transition state genes transcriptional regulator AbrB Regulator
  PO845_RS00305 (PO845_00305) metG 46320..48311 (+) 1992 WP_060675319.1 methionine--tRNA ligase -
  PO845_RS00310 (PO845_00310) - 48388..49155 (+) 768 WP_017419495.1 TatD family hydrolase -
  PO845_RS00315 (PO845_00315) - 49290..50615 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.62 Da        Isoelectric Point: 7.9639

>NTDB_id=788005 PO845_RS00300 WP_170936346.1 45547..45837(-) (abrB) [Bacillus velezensis strain PT4]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIKNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=788005 PO845_RS00300 WP_170936346.1 45547..45837(-) (abrB) [Bacillus velezensis strain PT4]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATACTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTAAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969