Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PUO96_RS20345 | Genome accession | NZ_CP117853 |
| Coordinates | 4318494..4319336 (-) | Length | 280 a.a. |
| NCBI ID | WP_048263543.1 | Uniprot ID | - |
| Organism | Klebsiella michiganensis strain 2020CK-00215 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4313494..4324336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUO96_RS20320 (PUO96_20320) | - | 4314949..4315290 (-) | 342 | WP_004848570.1 | RamA family antibiotic efflux transcriptional regulator | - |
| PUO96_RS20325 (PUO96_20325) | - | 4315323..4316423 (-) | 1101 | WP_064405508.1 | MBL fold metallo-hydrolase | - |
| PUO96_RS20330 (PUO96_20330) | - | 4316614..4317195 (+) | 582 | WP_064405502.1 | TetR/AcrR family transcriptional regulator | - |
| PUO96_RS20335 (PUO96_20335) | - | 4317195..4317563 (+) | 369 | WP_014228308.1 | MmcQ/YjbR family DNA-binding protein | - |
| PUO96_RS20340 (PUO96_20340) | nfsB | 4317682..4318335 (+) | 654 | WP_014228307.1 | oxygen-insensitive NAD(P)H nitroreductase | - |
| PUO96_RS20345 (PUO96_20345) | pilD | 4318494..4319336 (-) | 843 | WP_048263543.1 | prepilin peptidase | Machinery gene |
| PUO96_RS20350 (PUO96_20350) | - | 4319398..4320138 (-) | 741 | WP_064358069.1 | type II secretion system protein N | - |
| PUO96_RS20355 (PUO96_20355) | gspM | 4320128..4320622 (-) | 495 | WP_014228304.1 | type II secretion system protein GspM | - |
| PUO96_RS20360 (PUO96_20360) | gspL | 4320609..4321814 (-) | 1206 | WP_064405499.1 | type II secretion system protein GspL | - |
| PUO96_RS20365 (PUO96_20365) | gspK | 4321814..4322800 (-) | 987 | WP_048263546.1 | type II secretion system minor pseudopilin GspK | - |
| PUO96_RS20370 (PUO96_20370) | gspJ | 4322797..4323396 (-) | 600 | WP_072065692.1 | type II secretion system minor pseudopilin GspJ | - |
| PUO96_RS20375 (PUO96_20375) | gspI | 4323393..4323758 (-) | 366 | WP_048263547.1 | type II secretion system minor pseudopilin GspI | - |
| PUO96_RS20380 (PUO96_20380) | gspH | 4323755..4324306 (-) | 552 | WP_064374605.1 | type II secretion system minor pseudopilin GspH | - |
Sequence
Protein
Download Length: 280 a.a. Molecular weight: 30473.56 Da Isoelectric Point: 8.7485
>NTDB_id=787992 PUO96_RS20345 WP_048263543.1 4318494..4319336(-) (pilD) [Klebsiella michiganensis strain 2020CK-00215]
MTLLVAFSSTYPIIWWFGLGATGAIVGSFLNVVICRLPVMLEKHWQREALLQLSLPSSEPTARFNLVLPHSRCPYCHTPV
AARDNIPLLSFLLLKGKARCCGAPISAQYPLVEAATAALFVLTARVFPPGLALCGAWVFVSFLLILAVIDYHRQLLPDVL
TLPLLWIGLLFNLQSCFVSLPQATIGAVAGYLCLWCLFWLFKLLTGKDALGYGDFKLLAALGAWLGWQALPHVVLLAAIS
GLLFAFVQRGGAKKDLNQPLAFGPWLALAGVANMLLFQGI
MTLLVAFSSTYPIIWWFGLGATGAIVGSFLNVVICRLPVMLEKHWQREALLQLSLPSSEPTARFNLVLPHSRCPYCHTPV
AARDNIPLLSFLLLKGKARCCGAPISAQYPLVEAATAALFVLTARVFPPGLALCGAWVFVSFLLILAVIDYHRQLLPDVL
TLPLLWIGLLFNLQSCFVSLPQATIGAVAGYLCLWCLFWLFKLLTGKDALGYGDFKLLAALGAWLGWQALPHVVLLAAIS
GLLFAFVQRGGAKKDLNQPLAFGPWLALAGVANMLLFQGI
Nucleotide
Download Length: 843 bp
>NTDB_id=787992 PUO96_RS20345 WP_048263543.1 4318494..4319336(-) (pilD) [Klebsiella michiganensis strain 2020CK-00215]
ATGACATTATTAGTGGCTTTTTCATCCACGTATCCCATCATTTGGTGGTTTGGTCTTGGGGCGACAGGCGCTATCGTCGG
GAGTTTTCTCAATGTGGTGATCTGCCGCTTACCCGTAATGCTCGAGAAACACTGGCAGCGTGAGGCGTTGCTGCAGCTGT
CACTGCCTTCATCTGAACCCACGGCGCGCTTTAATCTGGTATTGCCGCACTCTCGTTGCCCATATTGTCATACTCCTGTT
GCCGCAAGGGATAATATACCTCTGCTGAGTTTCCTGTTGTTAAAGGGCAAGGCTCGCTGTTGCGGCGCGCCTATTTCCGC
GCAGTATCCGCTGGTTGAGGCGGCCACCGCCGCGCTGTTTGTCTTAACCGCGCGTGTATTTCCGCCGGGGCTGGCGCTTT
GTGGCGCCTGGGTATTCGTCTCTTTTTTATTGATCCTGGCCGTTATTGATTATCACCGACAGCTGCTACCCGATGTCCTG
ACGCTGCCCTTATTGTGGATCGGCTTACTGTTTAATCTTCAGTCGTGTTTTGTTTCGTTGCCGCAGGCGACGATTGGCGC
AGTGGCAGGATATCTCTGCTTGTGGTGCCTGTTCTGGCTCTTCAAGCTACTGACAGGCAAGGATGCGCTGGGCTATGGCG
ATTTTAAGCTACTGGCCGCGCTGGGGGCCTGGCTAGGCTGGCAAGCATTACCCCATGTGGTTTTACTGGCGGCGATAAGC
GGATTGCTGTTTGCGTTCGTACAGCGAGGAGGGGCAAAAAAAGATCTCAATCAGCCGCTGGCATTCGGCCCGTGGCTGGC
CTTAGCCGGTGTGGCAAATATGCTGCTATTTCAGGGTATTTGA
ATGACATTATTAGTGGCTTTTTCATCCACGTATCCCATCATTTGGTGGTTTGGTCTTGGGGCGACAGGCGCTATCGTCGG
GAGTTTTCTCAATGTGGTGATCTGCCGCTTACCCGTAATGCTCGAGAAACACTGGCAGCGTGAGGCGTTGCTGCAGCTGT
CACTGCCTTCATCTGAACCCACGGCGCGCTTTAATCTGGTATTGCCGCACTCTCGTTGCCCATATTGTCATACTCCTGTT
GCCGCAAGGGATAATATACCTCTGCTGAGTTTCCTGTTGTTAAAGGGCAAGGCTCGCTGTTGCGGCGCGCCTATTTCCGC
GCAGTATCCGCTGGTTGAGGCGGCCACCGCCGCGCTGTTTGTCTTAACCGCGCGTGTATTTCCGCCGGGGCTGGCGCTTT
GTGGCGCCTGGGTATTCGTCTCTTTTTTATTGATCCTGGCCGTTATTGATTATCACCGACAGCTGCTACCCGATGTCCTG
ACGCTGCCCTTATTGTGGATCGGCTTACTGTTTAATCTTCAGTCGTGTTTTGTTTCGTTGCCGCAGGCGACGATTGGCGC
AGTGGCAGGATATCTCTGCTTGTGGTGCCTGTTCTGGCTCTTCAAGCTACTGACAGGCAAGGATGCGCTGGGCTATGGCG
ATTTTAAGCTACTGGCCGCGCTGGGGGCCTGGCTAGGCTGGCAAGCATTACCCCATGTGGTTTTACTGGCGGCGATAAGC
GGATTGCTGTTTGCGTTCGTACAGCGAGGAGGGGCAAAAAAAGATCTCAATCAGCCGCTGGCATTCGGCCCGTGGCTGGC
CTTAGCCGGTGTGGCAAATATGCTGCTATTTCAGGGTATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.06 |
95.357 |
0.496 |
| pilD | Vibrio campbellii strain DS40M4 |
49.084 |
97.5 |
0.479 |
| pilD | Neisseria gonorrhoeae MS11 |
47.791 |
88.929 |
0.425 |
| pilD | Acinetobacter nosocomialis M2 |
43.548 |
88.571 |
0.386 |
| pilD | Acinetobacter baumannii D1279779 |
43.145 |
88.571 |
0.382 |