Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6378_RS05630 Genome accession   NZ_CP130889
Coordinates   1080720..1081205 (+) Length   161 a.a.
NCBI ID   WP_125121586.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075720..1086205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS05590 (Q6378_05590) - 1075787..1076530 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  Q6378_RS05595 (Q6378_05595) - 1076527..1077216 (+) 690 WP_003696506.1 SprT family zinc-dependent metalloprotease -
  Q6378_RS05600 (Q6378_05600) - 1077280..1077471 (-) 192 WP_014580443.1 hypothetical protein -
  Q6378_RS05605 (Q6378_05605) pilE 1077801..1078118 (+) 318 WP_003697861.1 pilin Machinery gene
  Q6378_RS05610 (Q6378_05610) - 1078084..1078770 (+) 687 WP_143824052.1 pilin -
  Q6378_RS05615 (Q6378_05615) - 1079296..1079735 (+) 440 Protein_1097 pilin -
  Q6378_RS05620 (Q6378_05620) - 1079870..1080263 (+) 394 Protein_1098 pilin -
  Q6378_RS05625 (Q6378_05625) - 1080316..1080663 (+) 348 Protein_1099 pilin -
  Q6378_RS05630 (Q6378_05630) pilE 1080720..1081205 (+) 486 WP_125121586.1 pilin Machinery gene
  Q6378_RS05635 (Q6378_05635) - 1081340..1081722 (+) 383 Protein_1101 pilin -
  Q6378_RS05640 (Q6378_05640) lpxC 1082216..1083139 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6378_RS05645 (Q6378_05645) - 1083284..1083667 (+) 384 Protein_1103 pilin -
  Q6378_RS05650 (Q6378_05650) - 1083728..1084048 (+) 321 Protein_1104 pilin -
  Q6378_RS05655 (Q6378_05655) - 1084171..1084289 (+) 119 Protein_1105 pilin -
  Q6378_RS05660 (Q6378_05660) - 1085105..1085610 (+) 506 Protein_1106 pilin -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17314.41 Da        Isoelectric Point: 9.7934

>NTDB_id=787946 Q6378_RS05630 WP_125121586.1 1080720..1081205(+) (pilE) [Neisseria gonorrhoeae strain NJ209649]
MASSPTDIKGKYVKSVTVAKGVVTAQMASTGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRTDKANDDVTDDATATMNS
SNVNKEIQGKKLSLWARRQDGSVKWFCGQPVKRDNANADTVTADATGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKN
T

Nucleotide


Download         Length: 486 bp        

>NTDB_id=787946 Q6378_RS05630 WP_125121586.1 1080720..1081205(+) (pilE) [Neisseria gonorrhoeae strain NJ209649]
GTGGCATCCTCCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAAT
GGCTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGACAAAGCCAACGACGACGTTACCGACGACGCCACCGCCACAATGAATTCA
AGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTCAAGACGGTTCGGTAAAATGGTTCTG
CGGACAGCCGGTTAAGCGCGACAACGCCAACGCCGACACCGTCACCGCCGACGCCACCGGCAACGACGGCAAAATCGACA
CCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAAT
ACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(3-61)

Pilin (bacterial filament) (Pilin)

(72-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.66

91.304

0.453