Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q6378_RS05480 Genome accession   NZ_CP130889
Coordinates   1055428..1056396 (+) Length   322 a.a.
NCBI ID   WP_003699352.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050428..1061396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS05460 (Q6378_05460) - 1051110..1051400 (-) 291 WP_003687059.1 co-chaperone GroES -
  Q6378_RS05465 (Q6378_05465) fetA 1051906..1054077 (+) 2172 WP_125121556.1 TonB-dependent siderophore receptor FetA/FrpB -
  Q6378_RS05470 (Q6378_05470) - 1054229..1055200 (+) 972 WP_012504096.1 siderophore ABC transporter substrate-binding protein -
  Q6378_RS05475 (Q6378_05475) - 1055218..1055409 (+) 192 WP_162098494.1 hypothetical protein -
  Q6378_RS05480 (Q6378_05480) ceuB 1055428..1056396 (+) 969 WP_003699352.1 ABC transporter permease Machinery gene
  Q6378_RS05485 (Q6378_05485) - 1056386..1057360 (+) 975 WP_047924481.1 iron chelate uptake ABC transporter family permease subunit -
  Q6378_RS05490 (Q6378_05490) - 1057405..1058031 (+) 627 WP_003690385.1 FmdE family protein -
  Q6378_RS05495 (Q6378_05495) - 1058115..1058873 (+) 759 WP_103195314.1 ABC transporter ATP-binding protein -
  Q6378_RS05500 (Q6378_05500) - 1058908..1059560 (-) 653 Protein_1074 IS1595 family transposase -
  Q6378_RS05505 (Q6378_05505) - 1059546..1060853 (+) 1308 WP_050155703.1 YadA-like family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34400.71 Da        Isoelectric Point: 10.5988

>NTDB_id=787944 Q6378_RS05480 WP_003699352.1 1055428..1056396(+) (ceuB) [Neisseria gonorrhoeae strain NJ209649]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=787944 Q6378_RS05480 WP_003699352.1 1055428..1056396(+) (ceuB) [Neisseria gonorrhoeae strain NJ209649]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGACTTTTCAAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.196

93.478

0.385