Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PO765_RS11980 Genome accession   NZ_CP117848
Coordinates   2605966..2607339 (+) Length   457 a.a.
NCBI ID   WP_331694516.1    Uniprot ID   -
Organism   Pandoraea sputorum strain B09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600966..2612339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO765_RS11960 - 2601210..2602325 (+) 1116 WP_331694515.1 DUF1853 family protein -
  PO765_RS11965 thiD 2602398..2603240 (-) 843 WP_150777631.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PO765_RS11970 lplT 2603242..2604534 (-) 1293 WP_039398774.1 lysophospholipid transporter LplT -
  PO765_RS11975 alr 2604873..2605943 (+) 1071 WP_150659227.1 alanine racemase -
  PO765_RS11980 radA 2605966..2607339 (+) 1374 WP_331694516.1 DNA repair protein RadA Machinery gene
  PO765_RS11985 - 2607409..2608110 (-) 702 WP_322882010.1 hypothetical protein -
  PO765_RS11990 - 2608187..2610127 (-) 1941 WP_039398768.1 ATP-binding cassette domain-containing protein -
  PO765_RS11995 cls 2610340..2611767 (-) 1428 WP_150659230.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48207.41 Da        Isoelectric Point: 6.9985

>NTDB_id=787901 PO765_RS11980 WP_331694516.1 2605966..2607339(+) (radA) [Pandoraea sputorum strain B09]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAEASTGHRYQSLAKSTPIRKLAEIEASDVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYLSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=787901 PO765_RS11980 WP_331694516.1 2605966..2607339(+) (radA) [Pandoraea sputorum strain B09]
ATGGCTAAAGCCAAGACCGTCTATATCTGTACCGAATGCGGTGGCCAGACCCCCAAGTGGGCTGGCCAGTGTCCTAATTG
CAATGGCTGGAATACGCTCGTCGAATCGGTGGCGGAAGCGTCTACAGGTCACCGCTATCAATCGCTGGCCAAGAGCACGC
CGATTCGCAAGCTGGCGGAAATCGAAGCCTCTGATGTACCGCGTTTTTCCAGCGGCGTGAGCGAATTCGATCGCGTGCTG
GGCGGAGGTCTCGTCGCGGGCGGTGTGGTGTTGATCGGCGGTGACCCGGGGATCGGCAAGTCGACGCTGCTGCTGCAATC
GCTCGCGCATCTCGCGCGTGAGCGTCGGGCGTTGTATTTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGTTGCGTGCGC
AGCGGCTCGGCCTTGGGGCGGCTGGCGAGGGCGGTGGCGAACTCGATCTGCTCGCCGAAATCCAGCTTGAGAAGATTCTC
GGTGCGATCGAATCGGAAAAACCCGACGTCGTCGTCATCGACTCGATTCAGACGATCTATTCCGAAGCGCTGACGTCGGC
CCCGGGATCGGTCGCGCAAGTGCGAGAGTGCGCAGCGCAACTGACGCGCACCGCCAAGCAGAGTGGCGTGACGGTCATCA
TGGTCGGCCACGTGACGAAGGAAGGTAGTCTCGCCGGGCCACGCGTGTTGGAACACATTGTGGACACGGTGCTTTACTTC
GAAGGCGATACGCATTCGTCGTATCGTCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCTGTGAATGAGCTGGGCGTGTT
TGCAATGACGGAAAAGGGGTTGCGTGGCGTGGCCAACCCGTCGGCGCTCTTCCTCTCGCAGCATGAGCAAAGCGTGCCTG
GTTCGTGTGTGCTGGTGACGCAGGAGGGCACACGGCCGCTGCTCGTCGAAGTGCAGGCGCTGGTCGATACTGCGCAGGTG
CCGAATCCGCGACGTCTGGCCGTGGGTCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGACGTGTTTCTGAATGCCGTCGGCGGTGTGAAGATTACCGAACCGGCTGCCGACCTGGCGG
TGTTGCTCGCGATCCATTCGTCATTGCGCAACAAACCGCTGCCACGAGGCATCGTGGCGTTCGGGGAAGTGGGGCTTGCC
GGGGAAATCCGGCCGAGTCCGCGCGGTCAGGATCGTCTCAAAGAGGCGGCTAAGCTGGGCTTCTCGATTGCGATCATTCC
GAAGGCAAATGCGCCGAAGCAGCCGATCGACGGGCTGGAGGTCCATGCCGTCGACCGTCTGGAACAAGCCATCTCGGTGG
TGGCAGGACTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.501
  radA Streptococcus pneumoniae Rx1

48.837

94.092

0.46
  radA Streptococcus pneumoniae D39

48.837

94.092

0.46
  radA Streptococcus pneumoniae R6

48.837

94.092

0.46
  radA Streptococcus pneumoniae TIGR4

48.837

94.092

0.46
  radA Streptococcus mitis SK321

48.837

94.092

0.46
  radA Streptococcus mitis NCTC 12261

48.837

94.092

0.46