Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PO765_RS02865 Genome accession   NZ_CP117848
Coordinates   612353..613843 (-) Length   496 a.a.
NCBI ID   WP_039395518.1    Uniprot ID   A0A239S8W9
Organism   Pandoraea sputorum strain B09     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607353..618843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO765_RS02835 mutY 607355..608512 (+) 1158 WP_331692392.1 A/G-specific adenine glycosylase -
  PO765_RS02840 rapZ 608529..609401 (-) 873 WP_039395504.1 RNase adapter RapZ -
  PO765_RS02845 - 609593..609925 (-) 333 WP_039395507.1 PsiF family protein -
  PO765_RS02850 hprK 610108..611073 (-) 966 WP_331692393.1 HPr(Ser) kinase/phosphatase -
  PO765_RS02855 ptsN 611164..611619 (-) 456 WP_039395512.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PO765_RS02860 hpf 611855..612211 (-) 357 WP_039395515.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PO765_RS02865 rpoN/rpoN1 612353..613843 (-) 1491 WP_039395518.1 RNA polymerase factor sigma-54 Machinery gene
  PO765_RS02870 lptB 613937..614707 (-) 771 WP_039402130.1 LPS export ABC transporter ATP-binding protein -
  PO765_RS02875 lptA 614742..615434 (-) 693 WP_052252464.1 lipopolysaccharide transport periplasmic protein LptA -
  PO765_RS02880 lptC 615431..616108 (-) 678 WP_150661075.1 LPS export ABC transporter periplasmic protein LptC -
  PO765_RS02885 - 616133..616618 (-) 486 WP_052253166.1 HAD family hydrolase -
  PO765_RS02890 - 616740..617720 (-) 981 WP_039395525.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55111.96 Da        Isoelectric Point: 5.1828

>NTDB_id=787894 PO765_RS02865 WP_039395518.1 612353..613843(-) (rpoN/rpoN1) [Pandoraea sputorum strain B09]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSSSSGSSNDN
GPEASNGHDEARELDGEARFDDNASDNGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKASPRDRAL
VEFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASGVRTLSLRIV
TDHLELLAARDYTRLRRLLGVGEDGLRAAHQLIRSLDPFPGAAYGAPQADYVVPDVLVRKQGSGWTAELNPEVMPRLRIN
EMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHEST
ISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAK
YREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=787894 PO765_RS02865 WP_039395518.1 612353..613843(-) (rpoN/rpoN1) [Pandoraea sputorum strain B09]
ATGAAACCGACTCTTCAACTCCGCACCTCTCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCGACGCTCGAACTTCAACAGGAAGTCGAGCACGCCCTTACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCCGGTTCGGTACGTGTGGGCACAGACGGGTCGCTGCGCAACGAACGGAGTTCGTCGTCGGGCAGTTCGAACGACAAT
GGCCCCGAGGCCTCCAACGGTCACGACGAAGCGCGCGAACTCGATGGTGAGGCCCGCTTCGACGACAACGCGTCGGACAA
CGGCAGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCGCATCGGACGACGACGACAATGCGCGTCCGCAACTTC
ACGTCGACCACCCCAATCTCCGCGAACATCTGCTGGCCCAACTGCGCCTGACCAAGGCGAGTCCGCGCGACCGCGCGCTG
GTGGAATTCCTGATCGAATCGCTGGACGAAGACGGCTACCTCGGTAGCCTGCTCGACGAAATTCAGGCCGAAATGCCTGA
AGAACTGGCGCTCGAAACGGAAGAGATCAACGCGGCGCTGGCGCTGCTGCAAAGCTTCGACCCGGCGGGCGTGGGTGCCC
GCAGCCCGGCCGAATGCCTGCGTCTACAGCTCCAGCGCCTGCCCGCTAGCGGTGTGCGCACCCTGTCGCTGCGCATCGTC
ACCGATCACCTGGAACTGCTGGCCGCGCGCGATTACACGCGTCTGCGCCGCCTGCTAGGTGTCGGCGAAGACGGCCTGCG
CGCCGCGCATCAGCTGATTCGCTCGCTGGACCCCTTCCCGGGCGCGGCTTACGGCGCGCCTCAGGCCGACTACGTCGTGC
CGGACGTGCTGGTACGCAAGCAAGGGAGCGGCTGGACGGCGGAGCTGAATCCGGAAGTAATGCCGCGACTGCGTATCAAC
GAGATGTATGCGCGCATTCTCCGAAATAACCGGAACGATCCGGGAACCGGCAACCTCCAACAGCAGTTGCAGGAAGCGCG
CTGGCTGATCAAGAACATCCAGCAACGCTTCGACACGATCCTGCGGGTGGCGCAGGCGATTGTCGAGCGCCAAAAGAACT
TCTTCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACG
ATTTCACGCGTGACAACGAGTAAGTACATGCTCACTCCATTTGGAACCTTCGAGCTCAAGTACTTCTTCGGATCACACGT
GGCAACGGAAGCCGGAGGCGCTGCGTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGC
AGAGCCCCCTTTCCGATAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGCACTGTCGCGAAG
TACCGCGAGGCCATGCGAATCCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239S8W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

69.062

100

0.698