Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PUP35_RS07445 Genome accession   NZ_CP117838
Coordinates   1603778..1604404 (+) Length   208 a.a.
NCBI ID   WP_115874652.1    Uniprot ID   -
Organism   Enterobacter sp. S-33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598778..1609404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUP35_RS07425 - 1599176..1600936 (-) 1761 WP_274242474.1 Lon protease family protein -
  PUP35_RS07430 matP 1601123..1601575 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  PUP35_RS07435 ompA 1601641..1602696 (-) 1056 WP_023311028.1 porin OmpA -
  PUP35_RS07440 sulA 1603051..1603560 (-) 510 WP_274243241.1 SOS-induced cell division inhibitor SulA -
  PUP35_RS07445 sxy/tfoX 1603778..1604404 (+) 627 WP_115874652.1 TfoX/Sxy family DNA transformation protein Regulator
  PUP35_RS07450 yccS 1604361..1606523 (-) 2163 WP_115874653.1 YccS family putative transporter -
  PUP35_RS07455 - 1606543..1606989 (-) 447 WP_111964540.1 YccF domain-containing protein -
  PUP35_RS07460 helD 1607113..1609167 (+) 2055 WP_274242475.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24090.71 Da        Isoelectric Point: 8.6320

>NTDB_id=787875 PUP35_RS07445 WP_115874652.1 1603778..1604404(+) (sxy/tfoX) [Enterobacter sp. S-33]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEEMLRELGARACWLKMRAKN
KALSIKVLFALEGAIEGMHEAALPADIRRELTEWFNALTEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=787875 PUP35_RS07445 WP_115874652.1 1603778..1604404(+) (sxy/tfoX) [Enterobacter sp. S-33]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCTCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCACCGCGCGTT
GTTTGGCGGCTATACCCTTGCGGTGGATGATGCTGTTTTTGCCATGGTCTCAGACGGCGAGCTTTACCTTCGCGCCTGTG
AGGAGAGTGCCAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTTGATGACGGATTATGGCAGGACAGGGAGCGGTTACTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGTTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCTAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATCACCAATGAGGAAATGTTGCGGGAGCTTGGTGCCAGGGCGTGCTGGCTAAAGATGCGGGCAAAAAAT
AAAGCGCTGAGTATTAAAGTACTCTTCGCGTTGGAAGGGGCTATCGAGGGGATGCATGAAGCGGCACTCCCGGCAGATAT
TCGCCGGGAGCTCACGGAGTGGTTTAATGCGTTGACTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577