Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PQ478_RS20635 Genome accession   NZ_CP117835
Coordinates   3966137..3967090 (-) Length   317 a.a.
NCBI ID   WP_012960813.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus strain DSM 8715     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3961137..3972090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ478_RS20610 (PQ478_20610) - 3961323..3961778 (-) 456 WP_289235432.1 DinB family protein -
  PQ478_RS20615 (PQ478_20615) - 3961857..3962735 (-) 879 WP_289235433.1 NAD(P)-dependent oxidoreductase -
  PQ478_RS20620 (PQ478_20620) - 3963327..3964361 (-) 1035 WP_289235434.1 siderophore ABC transporter substrate-binding protein -
  PQ478_RS20625 (PQ478_20625) - 3964448..3965206 (-) 759 WP_022629511.1 ABC transporter ATP-binding protein -
  PQ478_RS20630 (PQ478_20630) - 3965200..3966147 (-) 948 WP_289235435.1 iron chelate uptake ABC transporter family permease subunit -
  PQ478_RS20635 (PQ478_20635) ceuB 3966137..3967090 (-) 954 WP_012960813.1 ABC transporter permease Machinery gene
  PQ478_RS20640 (PQ478_20640) - 3967295..3968803 (-) 1509 WP_289235436.1 DEAD/DEAH box helicase -
  PQ478_RS20645 (PQ478_20645) - 3969188..3970849 (-) 1662 WP_289235437.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35009.41 Da        Isoelectric Point: 10.2034

>NTDB_id=787866 PQ478_RS20635 WP_012960813.1 3966137..3967090(-) (ceuB) [Alkalihalophilus pseudofirmus strain DSM 8715]
MKIKYLVLLFILLSFGSLFVGVSDISPLEIFNMTDEQKHIFLTSRIPRLISIIIAGVGMSICGLIMQQLTRNKFVSPTTA
GTLDSARLGILVSMILFASASPLQKMIVAFLFALAGTFIFMKILERIKIKNTIFIPLVGLMFGNIVGSVTTFFAYRYDLI
QNMSSWLQGNFAVIIRGRYELLYISIPLLIVAYIFANRFTIAGMGEEFSKNLGLKYKQVVNIGLVIVAAITAVVVLTVGM
IPFLGLIIPNIVTIYKGDNLRENLPHTALLGAVFVLFCDILGRIIIYPYEIPIGLTVGVIGSGIFLYLLLGRKKHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=787866 PQ478_RS20635 WP_012960813.1 3966137..3967090(-) (ceuB) [Alkalihalophilus pseudofirmus strain DSM 8715]
ATGAAGATTAAATACTTAGTACTTTTATTTATCTTATTGTCATTTGGTTCCTTATTTGTAGGAGTATCTGATATTTCGCC
TTTAGAAATATTCAATATGACAGACGAGCAGAAACATATTTTCTTAACGAGCCGGATTCCGCGCCTGATCAGTATTATCA
TCGCAGGAGTTGGGATGAGTATTTGCGGATTAATTATGCAGCAGCTGACAAGAAATAAGTTTGTTTCACCGACCACCGCA
GGAACACTTGATTCAGCAAGACTGGGTATTTTAGTGAGCATGATCTTATTTGCTTCAGCAAGCCCGCTGCAAAAGATGAT
TGTTGCTTTTTTATTTGCGCTGGCAGGAACGTTCATTTTTATGAAAATCCTTGAGCGGATCAAAATTAAAAATACAATCT
TCATTCCTCTTGTCGGCTTAATGTTTGGAAACATCGTCGGATCGGTGACCACCTTTTTTGCTTACCGTTATGACTTAATT
CAGAACATGTCATCCTGGCTGCAAGGGAATTTTGCGGTCATTATCCGCGGTCGTTATGAATTGCTCTATATCAGTATTCC
TTTATTGATTGTCGCGTACATATTTGCTAACAGATTTACGATTGCTGGAATGGGTGAGGAATTTTCAAAGAACCTAGGCT
TGAAGTATAAGCAAGTAGTTAATATCGGCCTGGTAATTGTCGCTGCCATTACTGCAGTTGTTGTTTTAACTGTAGGAATG
ATTCCATTTTTAGGGCTGATCATTCCAAACATTGTAACGATTTATAAAGGAGATAATTTAAGAGAGAACCTGCCGCACAC
GGCGCTTCTAGGAGCTGTATTTGTACTGTTTTGTGACATTCTTGGGCGTATTATTATTTATCCGTACGAGATTCCAATTG
GATTAACTGTTGGTGTGATTGGAAGCGGAATCTTTCTTTATCTTCTACTCGGGAGAAAAAAACATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.449

98.423

0.546