Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   PQ478_RS15855 Genome accession   NZ_CP117835
Coordinates   2956683..2956862 (-) Length   59 a.a.
NCBI ID   WP_289236994.1    Uniprot ID   A0AAJ2NNJ7
Organism   Alkalihalophilus pseudofirmus strain DSM 8715     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951683..2961862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ478_RS15825 (PQ478_15825) - 2952057..2953103 (+) 1047 WP_289234819.1 LCP family protein -
  PQ478_RS15830 (PQ478_15830) fabF 2953181..2954416 (-) 1236 WP_289234820.1 beta-ketoacyl-ACP synthase II -
  PQ478_RS15835 (PQ478_15835) - 2954477..2955412 (-) 936 WP_012959763.1 beta-ketoacyl-ACP synthase III -
  PQ478_RS15840 (PQ478_15840) - 2955626..2955904 (+) 279 WP_012959764.1 hypothetical protein -
  PQ478_RS15845 (PQ478_15845) - 2955923..2956210 (-) 288 WP_012959765.1 hypothetical protein -
  PQ478_RS15850 (PQ478_15850) - 2956277..2956609 (-) 333 WP_289234821.1 hypothetical protein -
  PQ478_RS15855 (PQ478_15855) comZ 2956683..2956862 (-) 180 WP_289236994.1 ComZ family protein Regulator
  PQ478_RS15860 (PQ478_15860) - 2956997..2957953 (-) 957 WP_289234822.1 BMP family ABC transporter substrate-binding protein -
  PQ478_RS15865 (PQ478_15865) - 2958329..2959924 (+) 1596 WP_012959769.1 peptide chain release factor 3 -
  PQ478_RS15870 (PQ478_15870) - 2959961..2960710 (-) 750 WP_289234823.1 hypothetical protein -
  PQ478_RS15875 (PQ478_15875) - 2960697..2961362 (-) 666 WP_012959771.1 cobalamin-dependent protein -
  PQ478_RS15880 (PQ478_15880) - 2961584..2961790 (-) 207 WP_289234824.1 hypothetical protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6788.91 Da        Isoelectric Point: 4.2103

>NTDB_id=787854 PQ478_RS15855 WP_289236994.1 2956683..2956862(-) (comZ) [Alkalihalophilus pseudofirmus strain DSM 8715]
MNMKFMQIAMNHLPEGKKFLDDKGIELNMDDLQPMLELLLNVMSEAYELGLEEGKSESK

Nucleotide


Download         Length: 180 bp        

>NTDB_id=787854 PQ478_RS15855 WP_289236994.1 2956683..2956862(-) (comZ) [Alkalihalophilus pseudofirmus strain DSM 8715]
ATGAATATGAAATTTATGCAAATTGCAATGAATCATTTACCGGAAGGGAAAAAATTTCTAGATGACAAAGGAATCGAATT
AAACATGGATGATTTGCAGCCCATGCTTGAACTATTGCTTAATGTCATGTCTGAAGCATACGAGCTTGGTCTAGAAGAAG
GTAAATCTGAGAGTAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(1-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

50.877

96.61

0.492