Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   PQ477_RS00755 Genome accession   NZ_CP117834
Coordinates   125462..125650 (-) Length   62 a.a.
NCBI ID   WP_035395390.1    Uniprot ID   -
Organism   Shouchella hunanensis strain DSM 23008     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 120462..130650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ477_RS00740 (PQ477_00740) fabF 122823..124064 (-) 1242 WP_144559281.1 beta-ketoacyl-ACP synthase II -
  PQ477_RS00745 (PQ477_00745) - 124108..125043 (-) 936 WP_035395387.1 beta-ketoacyl-ACP synthase III -
  PQ477_RS00750 (PQ477_00750) - 125154..125465 (-) 312 WP_035395389.1 hypothetical protein -
  PQ477_RS00755 (PQ477_00755) comZ 125462..125650 (-) 189 WP_035395390.1 ComZ family protein Regulator
  PQ477_RS00760 (PQ477_00760) - 125796..127400 (+) 1605 WP_144559282.1 peptide chain release factor 3 -
  PQ477_RS00765 (PQ477_00765) - 127427..128170 (-) 744 WP_274272825.1 STAS domain-containing protein -
  PQ477_RS00770 (PQ477_00770) - 128157..128816 (-) 660 WP_035395394.1 B12-binding domain-containing protein -
  PQ477_RS00775 (PQ477_00775) - 128918..129586 (-) 669 WP_274272826.1 NAD-dependent epimerase/dehydratase family protein -
  PQ477_RS00780 (PQ477_00780) - 129619..130275 (-) 657 WP_274272827.1 hypothetical protein -
  PQ477_RS00785 (PQ477_00785) - 130427..130606 (-) 180 WP_035395400.1 YjzC family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7074.15 Da        Isoelectric Point: 4.0236

>NTDB_id=787797 PQ477_RS00755 WP_035395390.1 125462..125650(-) (comZ) [Shouchella hunanensis strain DSM 23008]
MTEQEKNMAFMQIAMKYVPEAKELLEGKGIELGFDDLQPMLALFTKVMNEAYELGQKDSEEA

Nucleotide


Download         Length: 189 bp        

>NTDB_id=787797 PQ477_RS00755 WP_035395390.1 125462..125650(-) (comZ) [Shouchella hunanensis strain DSM 23008]
ATGACTGAACAAGAAAAAAACATGGCATTTATGCAGATTGCAATGAAATATGTGCCAGAGGCTAAAGAATTGTTAGAAGG
AAAAGGGATTGAACTAGGATTTGACGATTTGCAGCCCATGTTAGCATTGTTTACCAAAGTGATGAATGAAGCGTATGAGT
TAGGGCAGAAAGATAGCGAAGAAGCATGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

59.649

91.935

0.548