Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   PT257_RS09505 Genome accession   NZ_CP117818
Coordinates   2140389..2140703 (-) Length   104 a.a.
NCBI ID   WP_061638309.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5916     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2135389..2145703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT257_RS09480 (PT257_09480) - 2135814..2136314 (-) 501 WP_011214243.1 hypothetical protein -
  PT257_RS09485 (PT257_09485) - 2136806..2137666 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  PT257_RS09490 (PT257_09490) - 2137784..2138980 (-) 1197 WP_011214245.1 murein transglycosylase A -
  PT257_RS09495 (PT257_09495) lpp1976 2139090..2139647 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  PT257_RS09500 (PT257_09500) lpp1977 2139644..2140450 (-) 807 WP_061638310.1 hypothetical protein Machinery gene
  PT257_RS09505 (PT257_09505) lpp1978 2140389..2140703 (-) 315 WP_061638309.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PT257_RS09510 (PT257_09510) hisC 2140863..2141972 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  PT257_RS09515 (PT257_09515) - 2142009..2142350 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  PT257_RS09520 (PT257_09520) secF 2142528..2143445 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  PT257_RS09525 (PT257_09525) secD 2143458..2145314 (-) 1857 WP_061638307.1 protein translocase subunit SecD -
  PT257_RS09530 (PT257_09530) yajC 2145336..2145671 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=787742 PT257_RS09505 WP_061638309.1 2140389..2140703(-) (lpp1978) [Legionella pneumophila strain D5916]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=787742 PT257_RS09505 WP_061638309.1 2140389..2140703(-) (lpp1978) [Legionella pneumophila strain D5916]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971