Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   PT257_RS00700 Genome accession   NZ_CP117818
Coordinates   158710..159402 (+) Length   230 a.a.
NCBI ID   WP_011212783.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5916     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 153710..164402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT257_RS00680 (PT257_00680) - 154331..154507 (-) 177 WP_014840774.1 dodecin domain-containing protein -
  PT257_RS00685 (PT257_00685) - 154685..157153 (+) 2469 WP_061637889.1 hypothetical protein -
  PT257_RS00690 (PT257_00690) dapB 157257..157988 (-) 732 WP_027225347.1 4-hydroxy-tetrahydrodipicolinate reductase -
  PT257_RS00695 (PT257_00695) - 158168..158353 (-) 186 WP_011212782.1 hypothetical protein -
  PT257_RS00700 (PT257_00700) rocC 158710..159402 (+) 693 WP_011212783.1 ProQ/FinO family protein Regulator
  PT257_RS00705 (PT257_00705) - 159403..160473 (+) 1071 WP_061784072.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25773.65 Da        Isoelectric Point: 10.6563

>NTDB_id=787714 PT257_RS00700 WP_011212783.1 158710..159402(+) (rocC) [Legionella pneumophila strain D5916]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGVSKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAENASMKIKKRVEKSVKNARKQVNAKAANHSYVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=787714 PT257_RS00700 WP_011212783.1 158710..159402(+) (rocC) [Legionella pneumophila strain D5916]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGCGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAGTTTCTAAAAGCAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGCGGA
GGTTACTGAGGAAGAAGCGGAGAATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCATATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCTCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

100

100

1