Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PT256_RS04990 Genome accession   NZ_CP117817
Coordinates   1046628..1047212 (+) Length   194 a.a.
NCBI ID   WP_013101268.1    Uniprot ID   A0A378K473
Organism   Legionella pneumophila strain D5573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1041628..1052212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS04970 (PT256_04970) - 1042978..1043985 (-) 1008 WP_013101264.1 hypothetical protein -
  PT256_RS04975 (PT256_04975) pilM 1044402..1045466 (+) 1065 WP_136629019.1 type IV pilus assembly protein PilM Machinery gene
  PT256_RS04980 (PT256_04980) pilN 1045470..1046018 (+) 549 WP_013101266.1 PilN domain-containing protein Machinery gene
  PT256_RS04985 (PT256_04985) pilO 1046032..1046631 (+) 600 WP_013101267.1 type 4a pilus biogenesis protein PilO Machinery gene
  PT256_RS04990 (PT256_04990) pilP 1046628..1047212 (+) 585 WP_013101268.1 pilus assembly protein PilP Machinery gene
  PT256_RS04995 (PT256_04995) pilQ 1047216..1049312 (+) 2097 WP_011946023.1 type IV pilus secretin PilQ Machinery gene
  PT256_RS05000 (PT256_05000) aroK 1049759..1050286 (+) 528 WP_010946667.1 shikimate kinase AroK -
  PT256_RS05005 (PT256_05005) aroB 1050273..1051382 (+) 1110 WP_013101269.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22026.56 Da        Isoelectric Point: 10.4471

>NTDB_id=787683 PT256_RS04990 WP_013101268.1 1046628..1047212(+) (pilP) [Legionella pneumophila strain D5573]
MIIKNNQTLILGFFGNSLRVSLTAATFRKSLLTGLLVLLLSACSGDSSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRIV
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=787683 PT256_RS04990 WP_013101268.1 1046628..1047212(+) (pilP) [Legionella pneumophila strain D5573]
ATGATAATTAAAAACAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGTGTTTCACTCACAGCAGCGACTTT
CCGAAAAAGTCTATTGACGGGGTTATTGGTACTATTACTTAGTGCCTGCTCTGGTGATAGCAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAGCAACCTGACGGTCAGATTAGCCGTGTGAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATTGTT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(49-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K473

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

94.33

100

0.943