Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   PT258_RS09690 Genome accession   NZ_CP117814
Coordinates   2179646..2179960 (-) Length   104 a.a.
NCBI ID   WP_061638309.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5241     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2174646..2184960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT258_RS09665 (PT258_09665) - 2175071..2175571 (-) 501 WP_011214243.1 hypothetical protein -
  PT258_RS09670 (PT258_09670) - 2176063..2176923 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  PT258_RS09675 (PT258_09675) - 2177041..2178237 (-) 1197 WP_011214245.1 murein transglycosylase A -
  PT258_RS09680 (PT258_09680) lpp1976 2178347..2178904 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  PT258_RS09685 (PT258_09685) lpp1977 2178901..2179707 (-) 807 WP_061638310.1 hypothetical protein Machinery gene
  PT258_RS09690 (PT258_09690) lpp1978 2179646..2179960 (-) 315 WP_061638309.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PT258_RS09695 (PT258_09695) hisC 2180120..2181229 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  PT258_RS09700 (PT258_09700) - 2181266..2181607 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  PT258_RS09705 (PT258_09705) secF 2181785..2182702 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  PT258_RS09710 (PT258_09710) secD 2182715..2184571 (-) 1857 WP_061638307.1 protein translocase subunit SecD -
  PT258_RS09715 (PT258_09715) yajC 2184593..2184928 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=787661 PT258_RS09690 WP_061638309.1 2179646..2179960(-) (lpp1978) [Legionella pneumophila strain D5241]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=787661 PT258_RS09690 WP_061638309.1 2179646..2179960(-) (lpp1978) [Legionella pneumophila strain D5241]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971