Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PQG02_RS02935 Genome accession   NZ_CP117768
Coordinates   551378..552904 (+) Length   508 a.a.
NCBI ID   WP_273766690.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546378..557904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQG02_RS02910 (PQG02_02970) - 546768..547433 (+) 666 WP_273766683.1 HEAT repeat domain-containing protein -
  PQG02_RS02915 (PQG02_02975) - 547696..548214 (-) 519 WP_273766685.1 DUF456 family protein -
  PQG02_RS02920 (PQG02_02980) - 548430..549344 (+) 915 WP_273766687.1 M48 family metallopeptidase -
  PQG02_RS02925 (PQG02_02985) - 549643..550281 (-) 639 WP_273766688.1 cofactor assembly of complex C subunit B -
  PQG02_RS02930 (PQG02_02990) - 550479..551207 (-) 729 WP_273769721.1 response regulator transcription factor -
  PQG02_RS02935 (PQG02_02995) radA 551378..552904 (+) 1527 WP_273766690.1 DNA repair protein RadA Machinery gene
  PQG02_RS02940 (PQG02_03000) - 553004..553714 (+) 711 WP_273766692.1 Uma2 family endonuclease -
  PQG02_RS02945 (PQG02_03005) - 553778..554611 (+) 834 WP_273766694.1 Uma2 family endonuclease -
  PQG02_RS02950 (PQG02_03010) - 554603..554827 (-) 225 WP_273766696.1 hypothetical protein -
  PQG02_RS02955 (PQG02_03015) - 555193..556440 (+) 1248 WP_273766697.1 serine/threonine-protein kinase -
  PQG02_RS02960 (PQG02_03020) - 556481..557389 (-) 909 WP_273766699.1 DUF3365 domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54656.49 Da        Isoelectric Point: 4.8198

>NTDB_id=787570 PQG02_RS02935 WP_273766690.1 551378..552904(+) (radA) [Nostoc sp. UHCC 0926]
MAKPKTFYVCNECGAESPQWFGKCPACGTYNSLEEQITIQSSVDVPSRGGVSSWQSTQTNGKSHAKPAKARASLTFDQIT
DRQIARWESGYEELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKSV
NLVNEQEVTVVVDSTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVAEGLREVANPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTTDDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=787570 PQG02_RS02935 WP_273766690.1 551378..552904(+) (radA) [Nostoc sp. UHCC 0926]
ATGGCAAAGCCAAAAACCTTTTACGTTTGTAACGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGCACATACAATTCTCTAGAAGAACAGATCACTATCCAGTCTTCAGTAGATGTACCCAGTCGAGGGGGAGTTAGTAGTT
GGCAATCAACTCAAACCAATGGCAAATCTCACGCTAAACCAGCTAAAGCGCGAGCCTCTTTAACATTTGACCAAATTACC
GATCGCCAAATTGCTCGATGGGAGTCTGGTTATGAAGAATTAGATCGGGTGCTTGGTGGTGGAGTTGTCCCAGGTTCTAT
GGTGTTGATTGGTGGTGATCCGGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCAAATCAATTAGCACAGAAATATC
GCATCCTTTACGTAACTGGTGAAGAATCAGGACAGCAGGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAAAGCGTA
AATCTGGTTAATGAGCAGGAGGTAACAGTGGTAGTAGATAGTACACTACCTATAGACCCTGACAGTATAGGCGCAGATTT
ATATGTATTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGACTCTCTAAAACCAAACGTGGCGGTGATTGATA
GTATCCAAACGGTGTTCTTTCCGGCGCTGACTTCTGCGCCCGGTTCGGTGGCTCAGGTACGGGAATGTACAGCAGCATTG
ATGAAGGTGGCGAAGCACGAAGATGTGACTATGCTGATTGTGGGACACGTCACCAAAGAAGGAGCGATCGCTGGGCCAAA
AGTTTTAGAACATTTAGTAGATACGGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGGACAGTGA
AAAACCGCTTCGGCGCAACTCACGAAATCGGCATTTTTGAAATGGTAGCGGAAGGACTGCGGGAAGTTGCCAACCCCTCA
GAGTTATTTTTAGGTAACCGTGACGATCCTGCGCCTGGTACTGCCATTGTCGTTGCTTGCGAAGGAACTCGCCCGATAGT
TGTGGAATTGCAAGCTTTGGTGAGTCCCACCAGCTACCCTTCCCCCCGGCGTGCTGGTACTGGCGTAGATTACAACCGCT
TGGTACAAATTCTCGCTGTCTTAGAAAAACGGGTGGGAATTCCCATGTCCAAGTTAGATTCCTACGTTGCTTCTGCGGGT
GGGTTGAATGTGGAAGAACCAGCCGTAGATTTAGGAATTGCGATCGCGATCGTTGCCAGTTTCCGCGATCGCATCGTCGA
TCCCGGTACAGTATTAATCGGTGAAGTTGGGTTAGGCGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTGAAAG
AAGCTGCTAAGTTGGGATTTAAACGAGCGATCGTGCCAAAAGGGACAAAATTTCCCGATCTTAATATTGAGATATTACCA
GTATCCAAAGTAATAGATGCAATTATCGCCGCCATCCCCCATCAGGAACTGACAACCGACGATTTAGAACCCGATGAAGA
TGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(89-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.101

97.047

0.486
  radA Streptococcus mitis SK321

46.029

96.654

0.445
  radA Streptococcus mitis NCTC 12261

47.548

92.323

0.439
  radA Streptococcus pneumoniae Rx1

47.548

92.323

0.439
  radA Streptococcus pneumoniae D39

47.548

92.323

0.439
  radA Streptococcus pneumoniae R6

47.548

92.323

0.439
  radA Streptococcus pneumoniae TIGR4

47.548

92.323

0.439