Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG328_RS32130 Genome accession   NZ_CP130730
Coordinates   7001061..7002035 (+) Length   324 a.a.
NCBI ID   WP_366489662.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6996061..7007035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS32115 (OG328_32035) - 6997467..6999101 (+) 1635 WP_405843840.1 ABC transporter substrate-binding protein -
  OG328_RS32120 (OG328_32040) - 6999156..7000079 (+) 924 WP_033286816.1 ABC transporter permease -
  OG328_RS32125 (OG328_32045) - 7000072..7001052 (+) 981 WP_405843842.1 ABC transporter permease -
  OG328_RS32130 (OG328_32050) amiE 7001061..7002035 (+) 975 WP_366489662.1 ABC transporter ATP-binding protein Regulator
  OG328_RS32135 (OG328_32055) - 7002028..7003113 (+) 1086 WP_405843845.1 ABC transporter ATP-binding protein -
  OG328_RS32140 (OG328_32060) - 7003352..7005475 (-) 2124 WP_405843847.1 prolyl oligopeptidase family serine peptidase -
  OG328_RS32145 (OG328_32065) - 7005691..7005885 (+) 195 WP_019058412.1 hypothetical protein -
  OG328_RS32150 (OG328_32070) mshB 7005909..7006766 (+) 858 WP_033286812.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35712.32 Da        Isoelectric Point: 6.1785

>NTDB_id=787558 OG328_RS32130 WP_366489662.1 7001061..7002035(+) (amiE) [Streptomyces sp. NBC_01518]
MLLEVRDLHVEFRTRDGVAKAVNGVNYSVDEGETLAVLGESGSGKSVTAQAVMGILDVPPGKITGGEILFRGKDLLKFKE
EERRKVRGAEMAMIFQDALSSLNPVLSVGDQLGEMFIVHRGMSRKDARTKAVELMDRVRIPGAAQRVRDYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLMHIPPGCAFNPRCPMAQDVCRTDEPELYEVDQHRGSACHFWRE
CLNG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=787558 OG328_RS32130 WP_366489662.1 7001061..7002035(+) (amiE) [Streptomyces sp. NBC_01518]
ATGCTGCTCGAAGTGCGGGACCTGCACGTGGAGTTCAGGACCAGGGACGGGGTCGCCAAGGCCGTCAACGGGGTCAACTA
CAGCGTGGACGAGGGGGAGACCCTCGCCGTGCTGGGGGAGTCGGGGTCCGGGAAGTCCGTGACCGCGCAGGCCGTGATGG
GGATCCTCGATGTGCCGCCGGGGAAGATCACCGGCGGGGAGATCCTCTTCCGGGGCAAGGACCTGCTGAAGTTCAAGGAA
GAGGAGCGGCGGAAAGTTCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCGCTCAACCCCGTGCTCTC
CGTGGGCGACCAGCTCGGCGAGATGTTCATCGTGCACCGGGGGATGTCCCGAAAGGACGCGCGCACCAAGGCGGTCGAGC
TGATGGACCGGGTGCGGATCCCGGGTGCCGCGCAGCGCGTCCGGGACTATCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCCATGGCGCTCGCCCTGGAGCCCGCGCTCATCATCGCCGACGAACCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAAGTCATGGACCTGCTGGCCGAGTTGCAGCGCGAGCTGCACATGGGGCTCATCCTCATCACCCACGACC
TCGGGGTCGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGTCGGCCCCGGTCCACGAC
ATCTACAAGGCCCCGGCCCACCCGTACACGCGCGGCCTGTTGGACTCCATCCCGCGGCTGGACCAGAAGGGCCAGGAGCT
CTACGCCATCAAGGGCCTGCCGCCGAACCTGATGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCCC
AGGACGTGTGCCGGACCGACGAACCCGAGCTGTACGAGGTGGACCAACACCGGGGCAGCGCCTGCCACTTCTGGAGGGAG
TGCCTCAATGGTTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.077

96.296

0.463
  amiE Streptococcus thermophilus LMD-9

48.077

96.296

0.463
  amiE Streptococcus salivarius strain HSISS4

47.756

96.296

0.46
  oppD Streptococcus mutans UA159

46.667

97.222

0.454