Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PTC86_RS13990 Genome accession   NZ_CP117764
Coordinates   2946007..2946333 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2022CK-00784     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941007..2951333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC86_RS13965 (PTC86_13965) hemC 2941624..2942541 (+) 918 WP_031944971.1 hydroxymethylbilane synthase -
  PTC86_RS13970 (PTC86_13970) - 2942546..2943313 (+) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  PTC86_RS13975 (PTC86_13975) - 2943322..2944161 (+) 840 WP_001230204.1 hypothetical protein -
  PTC86_RS13980 (PTC86_13980) - 2944171..2945364 (+) 1194 WP_000681783.1 hypothetical protein -
  PTC86_RS13985 (PTC86_13985) - 2945372..2945812 (+) 441 WP_000661570.1 acyl-CoA thioesterase -
  PTC86_RS13990 (PTC86_13990) hns 2946007..2946333 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  PTC86_RS13995 (PTC86_13995) gspN 2946666..2947409 (+) 744 WP_000730343.1 type II secretion system protein N -
  PTC86_RS14000 (PTC86_14000) - 2947409..2948245 (+) 837 WP_000870033.1 type II secretion system protein N -
  PTC86_RS14005 (PTC86_14005) gspD 2948287..2950563 (+) 2277 WP_273780454.1 type II secretion system secretin GspD -
  PTC86_RS14010 (PTC86_14010) - 2950604..2951233 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=787554 PTC86_RS13990 WP_000801427.1 2946007..2946333(+) (hns) [Acinetobacter baumannii strain 2022CK-00784]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=787554 PTC86_RS13990 WP_000801427.1 2946007..2946333(+) (hns) [Acinetobacter baumannii strain 2022CK-00784]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1