Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG328_RS16695 Genome accession   NZ_CP130730
Coordinates   3706846..3708774 (+) Length   642 a.a.
NCBI ID   WP_405839737.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3701846..3713774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS16680 (OG328_16660) - 3703013..3703318 (+) 306 WP_033284747.1 hypothetical protein -
  OG328_RS16685 (OG328_16665) - 3703492..3704949 (+) 1458 WP_033284712.1 FGGY-family carbohydrate kinase -
  OG328_RS16690 (OG328_16670) rcrP 3705113..3706846 (+) 1734 WP_399004006.1 ABC transporter ATP-binding protein Regulator
  OG328_RS16695 (OG328_16675) rcrQ 3706846..3708774 (+) 1929 WP_405839737.1 ABC transporter ATP-binding protein Regulator
  OG328_RS16700 (OG328_16680) - 3709114..3710424 (-) 1311 WP_033284709.1 RNA polymerase sigma factor -
  OG328_RS16705 (OG328_16685) dnaG 3710506..3712410 (-) 1905 WP_390159346.1 DNA primase -
  OG328_RS16710 (OG328_16690) - 3712449..3713723 (-) 1275 WP_033284707.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69444.10 Da        Isoelectric Point: 6.6739

>NTDB_id=787526 OG328_RS16695 WP_405839737.1 3706846..3708774(+) (rcrQ) [Streptomyces sp. NBC_01518]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERLTIGILLVCVVISVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALGTFMVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQLFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDPMPAERPAELRGLVALE
HVSFRYDPDKPLIEDLSLTVSPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=787526 OG328_RS16695 WP_405839737.1 3706846..3708774(+) (rcrQ) [Streptomyces sp. NBC_01518]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCAGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGCTGACCATCGGCATCCTGCTGGTGTGTGTGGTGATCAGCGTGGGGCTGAACG
TGGTGGGGCCGAAGATCCTCGGCAACGCCACCGACCTCGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGCGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCACTGGGCACGTTCATGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACGATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGCCTCCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTCCTCTCCCGCGCGACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTCGTCGCGCTGGTGACCGTACCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACGGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGCCAGGACGAGTCGGCGCAGCTGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCG
GTGGTGGGCGGCCTACGGGTCGCGTCCGGCTCGCTCTCGATCGGTGACGTACAGGCCTTCGTGCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTGGTCCAGTCGGGCGTCGCCTCGGCGGAACGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGGCACCGGACCCCATGCCGGCCGAACGCCCCGCCGAACTCCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGTCACCGGGCCACACGGTCGC
GATCGTCGGCCCGACGGGTGCGGGCAAGACGACTCTCGTGAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGTA
TCACCCTGGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACG
TGGCTGTTCGGCGGTTCCATCGCGGACAACATCGCGTACGGGGCCTCTCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GCGTCAGTGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTTGTCCTGGACGAG
GCGACGTCTTCGGTGGACACCCGTACGGAGGTGTTGATCCAGAAGGCGATGGCCAAACTCGCCCATGGCCGCACCTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGTTCGATCGTCGAACAGG
GCGCGCACGCGGATCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.806

96.262

0.383