Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG328_RS16690 Genome accession   NZ_CP130730
Coordinates   3705113..3706846 (+) Length   577 a.a.
NCBI ID   WP_399004006.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3700113..3711846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS16660 (OG328_16640) - 3701437..3702330 (+) 894 WP_405839734.1 universal stress protein -
  OG328_RS16680 (OG328_16660) - 3703013..3703318 (+) 306 WP_033284747.1 hypothetical protein -
  OG328_RS16685 (OG328_16665) - 3703492..3704949 (+) 1458 WP_033284712.1 FGGY-family carbohydrate kinase -
  OG328_RS16690 (OG328_16670) rcrP 3705113..3706846 (+) 1734 WP_399004006.1 ABC transporter ATP-binding protein Regulator
  OG328_RS16695 (OG328_16675) rcrQ 3706846..3708774 (+) 1929 WP_405839737.1 ABC transporter ATP-binding protein Regulator
  OG328_RS16700 (OG328_16680) - 3709114..3710424 (-) 1311 WP_033284709.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62685.95 Da        Isoelectric Point: 5.7461

>NTDB_id=787525 OG328_RS16690 WP_399004006.1 3705113..3706846(+) (rcrP) [Streptomyces sp. NBC_01518]
MLIRLLRTYLRPYRKPILLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYFGA
RTASAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LIAVVPTLTICVTIIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVDVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=787525 OG328_RS16690 WP_399004006.1 3705113..3706846(+) (rcrP) [Streptomyces sp. NBC_01518]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCCTCCTGCTGGTGCTGCTGCAGTTTCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCACACATCATCGACAACGGTGTGGTGAAGGGGGACACCGGTTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACGGGTGCCGTCTACTTCGGCGCG
CGCACCGCGTCCGCCGTCGGACGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGTTGGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTGGTGCCGACGCTGACCATCTGCGTGACGATCATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTGGACGCCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATTCGTGCCTTCGTGCGGGACG
AGTACGAGAAGGACCGGTTCCGTAAGGCCAACTCCGACCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCCCACCGGATCGCCAGCGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGACACGGAGTCCAGTGTCGTGCCG
CCGCTCGCGCCCGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGGTCCGCGGGGTCGGCTTCTGCTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGCCTGGTTGACGCGACCGACGGCGAGGTCCTCGTCGACGGTGTCGACGTGTCG
ACCATCGACCCGGTGCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTGGACTCCCCCATCGCACAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCGCAGCGGGTGGCGACGATCA
GGGACGCGGACCGGATCGTCGTACTCGACGAGGGTCGAGTCGTGGGGACGGGCCGCCATCACGAACTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.243

100

0.395