Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PTC92_RS16900 Genome accession   NZ_CP117759
Coordinates   3552910..3553236 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2022CK-00843     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547910..3558236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC92_RS16880 (PTC92_16880) - 3548010..3548639 (-) 630 WP_000219967.1 FHA domain-containing protein -
  PTC92_RS16885 (PTC92_16885) gspD 3548680..3550956 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  PTC92_RS16890 (PTC92_16890) - 3550998..3551834 (-) 837 WP_000870033.1 type II secretion system protein N -
  PTC92_RS16895 (PTC92_16895) gspN 3551834..3552577 (-) 744 WP_000730343.1 type II secretion system protein N -
  PTC92_RS16900 (PTC92_16900) hns 3552910..3553236 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  PTC92_RS16905 (PTC92_16905) - 3553431..3553871 (-) 441 WP_000661570.1 acyl-CoA thioesterase -
  PTC92_RS16910 (PTC92_16910) - 3553879..3555072 (-) 1194 WP_000681783.1 hypothetical protein -
  PTC92_RS16915 (PTC92_16915) - 3555082..3555921 (-) 840 WP_001230204.1 hypothetical protein -
  PTC92_RS16920 (PTC92_16920) - 3555930..3556697 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  PTC92_RS16925 (PTC92_16925) hemC 3556702..3557619 (-) 918 WP_031944971.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=787469 PTC92_RS16900 WP_000801427.1 3552910..3553236(-) (hns) [Acinetobacter baumannii strain 2022CK-00843]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=787469 PTC92_RS16900 WP_000801427.1 3552910..3553236(-) (hns) [Acinetobacter baumannii strain 2022CK-00843]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1