Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG742_RS30245 Genome accession   NZ_CP130727
Coordinates   6785659..6787392 (-) Length   577 a.a.
NCBI ID   WP_405911169.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00828     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6780659..6792392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG742_RS30235 (OG742_30175) - 6782167..6783483 (+) 1317 WP_405908683.1 RNA polymerase sigma factor -
  OG742_RS30240 (OG742_30180) rcrQ 6783731..6785659 (-) 1929 WP_371549460.1 ABC transporter ATP-binding protein Regulator
  OG742_RS30245 (OG742_30185) rcrP 6785659..6787392 (-) 1734 WP_405911169.1 ABC transporter ATP-binding protein Regulator
  OG742_RS30250 (OG742_30190) - 6787543..6788997 (-) 1455 WP_405908684.1 FGGY family carbohydrate kinase -
  OG742_RS30255 (OG742_30195) - 6789084..6789389 (-) 306 WP_405908685.1 YtxH domain-containing protein -
  OG742_RS30275 (OG742_30215) - 6790055..6791638 (-) 1584 WP_405908686.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62519.77 Da        Isoelectric Point: 6.7013

>NTDB_id=787462 OG742_RS30245 WP_405911169.1 6785659..6787392(-) (rcrP) [Streptomyces sp. NBC_00828]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIAISLAQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGLGVTLIIRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRKANADLTEVSLGTGRYLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PTAPVVELRRHGHLEIRGGGFRYPGAEEPVLTAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVNVA
TIEPRLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYKTDAMLRAALAAETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=787462 OG742_RS30245 WP_405911169.1 6785659..6787392(-) (rcrP) [Streptomyces sp. NBC_00828]
GTGCTCATACGACTACTTCGTACGTACCTCCGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACTCTCAACGCGCACATCATTGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCCTTCGGCGCAGTCATGATCGCGATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCGGCGGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCGCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGGTACTCGGCCTCGGTGTGACCCTGATCATCCGGCGACTGCGGCCGCTGTTCCGCTCCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGCGCCTTCGTACGGGACG
ACTACGAGAAGGAGCGTTTCCGGAAGGCGAACGCCGATCTGACCGAGGTGTCGCTGGGTACCGGGCGGTACCTGGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTGTCCTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGTATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCGACAGCAGCGTGGTGCCG
CCGACCGCACCCGTCGTGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGGGGCGGCGGGTTCCGTTACCCGGGTGCCGA
GGAGCCGGTGCTGACGGCCGTCGACCTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCCACGGGCAGTGGCA
AGTCGACGCTTCTCGGGCTCGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGAACGTGGCG
ACCATCGAGCCGAGACTGCTTGCCAAGACGGTCGGACTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCGAC
GAACCTGCGGTACGGCAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGCCTGGAGAACGGGCTCGACTCCCCCATCGCACAGGGCGGCACGAATGTGTCCGGTGGTCAGCGGCAGCGACTC
GCGATCGCCCGCACCCTCGTACAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACAAGACCGA
CGCCATGCTGCGCGCGGCGCTCGCCGCGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTAGGCACCGGGCGGCACCACGAACTGATGGCGGGCAAT
GAGACATACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.034

100

0.404