Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG742_RS30240 Genome accession   NZ_CP130727
Coordinates   6783731..6785659 (-) Length   642 a.a.
NCBI ID   WP_371549460.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00828     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6778731..6790659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG742_RS30230 (OG742_30170) dnaG 6780024..6781931 (+) 1908 WP_405908682.1 DNA primase -
  OG742_RS30235 (OG742_30175) - 6782167..6783483 (+) 1317 WP_405908683.1 RNA polymerase sigma factor -
  OG742_RS30240 (OG742_30180) rcrQ 6783731..6785659 (-) 1929 WP_371549460.1 ABC transporter ATP-binding protein Regulator
  OG742_RS30245 (OG742_30185) rcrP 6785659..6787392 (-) 1734 WP_405911169.1 ABC transporter ATP-binding protein Regulator
  OG742_RS30250 (OG742_30190) - 6787543..6788997 (-) 1455 WP_405908684.1 FGGY family carbohydrate kinase -
  OG742_RS30255 (OG742_30195) - 6789084..6789389 (-) 306 WP_405908685.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69349.65 Da        Isoelectric Point: 5.3011

>NTDB_id=787461 OG742_RS30240 WP_371549460.1 6783731..6785659(-) (rcrQ) [Streptomyces sp. NBC_00828]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLSQFKPERGTMYAMLSLGVVSVALSVLGPKILGRATDLVFAGIIGREMPAGQ
TKAEALEAMRARGDGGTADMLSGTDFTPGKGIDFGAVGNVLLLALCAFVVAGVLMAVSTRLSNRAINMTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALITVPLSFFIATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHNLVKVFGRQDESAAQFAEQNEQLYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPALRPDELRGRVALE
NVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAAMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEASRAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADAILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=787461 OG742_RS30240 WP_371549460.1 6783731..6785659(-) (rcrQ) [Streptomyces sp. NBC_00828]
ATGGCCGGGCCTATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAAACG
GCTCCTCTCCCAGTTCAAGCCCGAGCGCGGCACGATGTACGCGATGCTCTCCCTCGGTGTGGTCAGCGTGGCGCTGTCCG
TGCTGGGCCCGAAGATCCTGGGCAGGGCGACCGACCTGGTCTTCGCCGGGATCATCGGACGGGAGATGCCCGCCGGCCAG
ACGAAGGCCGAGGCCCTCGAGGCGATGCGGGCACGCGGCGACGGCGGCACGGCCGACATGCTCTCGGGTACGGACTTCAC
TCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGGAACGTACTGCTGCTCGCGCTCTGTGCGTTCGTGGTGGCCGGCGTGC
TGATGGCGGTGTCCACCCGGCTCTCGAACCGGGCGATCAACATGACCGTCTACCGGATGCGCGAGGACCTGCAGGCCAAG
CTGTCCCGCCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCCCTCCTCACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTCTCGCCGCTCCTCGCCCTGGTGGCACTGATCACCGTGCCGCTGTCCTTCTTCATCGCCACACGGGTCGGCAAG
CGTTCGCAGCCGCACTTCGTCCAGCAGTGGCGGACCACCGGAAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGGATGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGCAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCC
GTGGTGGGCGGGCTGCGGGTCGCGTCCGGCTCGTTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTGACCCAGGTCGCCTCCATGGCGAACCTCGTGCAGTCGGGCGTGGCCTCCGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGACGAGCAGGAGGCCGATCCGGTTCCGGCGCTCCGTCCCGACGAGCTGCGCGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTCCTCATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACTCTCGACGGGGTCGACATCGCCGCCATGTCCCGGGACGAACTCCGGGACGGCATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGGACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGGGGCGAGATCGAGGAAGC
CTCGCGGGCCGCCCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGGACGG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAG
GCGACGTCGTCCGTCGACACCCGGACGGAGGTCCTGATCCAGAAGGCGATGGCGAAGCTTGCGCACGGGCGTACGTCGTT
CGTGATCGCGCATCGGCTGTCGACGATCCGGGATGCGGACGCGATCCTCGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCGCGCACGCGGAGCTGCTTGCCGCGGACGGGGCGTACGCGCGCCTGTACAAGGCCCAGTTCGCGCAGGCGGTGGCTGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(44-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.097

96.573

0.407