Detailed information NTG0787442

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OG742_RS20710
• Genome accession: NZ_CP130727
• Coordinates: 4674659..4677256 (-)
• Length: 865 a.a.
• NCBI ID: WP_405907447.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00828
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4669659..4682256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG742_RS20685 (OG742_20650)	-	4669839..4670129 (-)	291	WP_405907444.1	hypothetical protein	-
OG742_RS20690 (OG742_20655)	-	4670258..4671448 (+)	1191	WP_405907445.1	pyridoxal phosphate-dependent aminotransferase	-
OG742_RS20695 (OG742_20660)	-	4671566..4672780 (+)	1215	WP_405907446.1	glycosyltransferase family 39 protein	-
OG742_RS20700 (OG742_20665)	-	4672958..4673488 (-)	531	WP_266457569.1	YbjN domain-containing protein	-
OG742_RS20705 (OG742_20670)	-	4673592..4674548 (-)	957	WP_405911100.1	AMP-binding protein	-
OG742_RS20710 (OG742_20675)	clpC	4674659..4677256 (-)	2598	WP_405907447.1	ATP-dependent chaperone ClpB	Regulator
OG742_RS20715 (OG742_20680)	-	4677404..4677820 (+)	417	WP_266457607.1	pyridoxamine 5'-phosphate oxidase family protein	-
OG742_RS20720 (OG742_20685)	-	4677954..4678289 (-)	336	WP_405907448.1	hypothetical protein	-
OG742_RS20725 (OG742_20690)	-	4678638..4679621 (+)	984	WP_405907449.1	helix-turn-helix transcriptional regulator	-
OG742_RS20730 (OG742_20695)	-	4679645..4680646 (+)	1002	WP_405907450.1	LuxR C-terminal-related transcriptional regulator	-
OG742_RS20735 (OG742_20700)	-	4680603..4681643 (-)	1041	WP_405907451.1	LuxR C-terminal-related transcriptional regulator	-

Sequence

Protein

• Length: 865 a.a.
• Molecular weight: 94575.17 Da
• Isoelectric Point: 4.7239

>NTDB_id=787442 OG742_RS20710 WP_405907447.1 4674659..4677256(-) (clpC) [Streptomyces sp. NBC_00828]
MDAELTNRSRDAINAASTRAVSGGHPDLTPAHLLLALIEGQDNENIIDLLAAVEADQASVRTGAERVLAGLPSVTGSTVA
PPQPNRELLAVIADAAERAKELGDEFISTEHLLIGIAAKGGQTGDILSQQGANAKKLLDAFQKSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGGDSSMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVVIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPLEIDELQRQVDRLRMEELALDKETDPASRERLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK
LDELRGQAERAQRDGDFDTASKLLYGEIPSLERDLEEASEAEVEVSKGTMVKDEVGPDEIADVVGAWTGIPAGRLLEGET
QKLLRMEEELGRRLIGQAEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILIL
TSNLGSQYLVEPMTSDEVKKQQVLEVVRASFKPEFLNRLDDLVVFSALNKEELERIARLQIDRLAGRLAQRRLTLEVTDA
ALAWLAEEGNDPAYGARPLRRLIQTAIGDRLAKEILAGEVKDGGTVRVDAFGDGLIVGPATGKTL

Nucleotide

• Length: 2598 bp

>NTDB_id=787442 OG742_RS20710 WP_405907447.1 4674659..4677256(-) (clpC) [Streptomyces sp. NBC_00828]
GTGGACGCCGAGCTGACCAACAGGAGCCGGGACGCGATCAACGCGGCCAGTACCCGGGCCGTGTCCGGGGGCCACCCGGA
CCTCACCCCCGCCCACCTGCTGCTCGCGCTGATCGAGGGGCAGGACAACGAGAACATCATCGACCTGCTGGCCGCCGTCG
AGGCCGACCAGGCCTCCGTGCGGACCGGCGCCGAGCGCGTGCTCGCGGGTCTGCCCAGCGTGACCGGATCCACCGTTGCG
CCCCCGCAGCCCAACCGTGAGCTGCTCGCCGTCATCGCGGACGCGGCCGAGCGGGCGAAGGAGCTCGGGGACGAGTTCAT
CTCCACCGAGCACCTGCTCATCGGAATCGCCGCCAAGGGCGGCCAGACCGGCGACATACTCTCCCAGCAGGGGGCGAACG
CCAAGAAGCTCCTCGACGCGTTCCAGAAGAGCAGGGGAGGGCGCCGGGTGACCACCCCGGATCCCGAGGGCCAGTACAAG
GCGCTCGAAAAGTTCGGTACCGACTTCACGGCCGCGGCGCGTGAGGGCAAGCTCGATCCCGTCATCGGCAGGGATCAGGA
AATCCGCCGGGTGGTGCAGGTCCTGTCCCGGCGCACCAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAGGGGCTCGCCCAGCGGATCGTGAAGGGCGACGTCCCGGAGTCGCTGAAGAACAAGCGGCTCGTCTCG
CTCGACCTGGGCGCGATGGTCGCCGGGGCGAAGTACCGGGGCGAGTTCGAGGAGCGGCTCAAGACCGTGCTCGCCGAGAT
CAAGGACTCCGACGGGCAGATCATCACCTTCATCGACGAGCTGCACACGGTCGTGGGCGCCGGCGCCGGCGGGGACTCCT
CCATGGACGCGGGCAACATGCTCAAGCCCATGCTCGCGCGCGGTGAGCTGCGCATGGTCGGTGCCACCACCCTCGACGAG
TACCGGGAGCGGATCGAGAAGGACCCCGCCCTGGAGCGGCGCTTCCAGCAGGTGCTCGTCGCCGAGCCGTCCGTCGAGGA
CACCATCGCGATCCTGCGCGGGCTCAAGGGGCGGTACGAGGCCCACCACAAGGTCGTGATCGCGGACAGCGCGCTCGTCG
CCGCCGCCACGCTCTCCGACCGGTACATCACCTCCCGCTTCCTCCCCGACAAGGCCATCGACCTCGTCGACGAGGCCGCG
TCCCGGCTGCGCATGGAGATCGACTCCTCCCCCCTCGAGATCGACGAGCTCCAGCGCCAGGTGGACCGGCTCCGCATGGA
GGAGCTGGCGCTCGACAAGGAGACCGACCCGGCCTCGCGCGAGCGCCTGGAGAAGCTGCGCCGTGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGCGTCGGTGAGCTGAAGGAGAAG
CTGGACGAACTCCGCGGCCAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACACCGCCTCCAAGCTGCTGTACGGCGA
GATCCCTTCCCTGGAACGGGACTTGGAGGAAGCCTCCGAGGCCGAGGTGGAGGTCTCCAAGGGCACCATGGTCAAGGACG
AGGTCGGGCCCGACGAGATCGCCGACGTGGTCGGCGCCTGGACCGGGATCCCGGCAGGACGCCTCCTCGAGGGCGAGACG
CAGAAACTCCTGCGCATGGAGGAGGAGTTGGGGCGCCGGCTCATCGGGCAGGCGGAGGCCGTGCAGGCGGTGTCCGATGC
CGTACGACGCACGCGCGCCGGAATCGCCGACCCCGACCGGCCCACCGGATCCTTCCTCTTCCTCGGCCCGACCGGCGTCG
GCAAGACCGAACTCGCCAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGCGCCATGGTCCGTATCGACATGAGCGAG
TACGGCGAGAAGCACAGCGTCGCCCGACTGGTGGGCGCGCCGCCCGGCTACGTCGGGTACGAGGAGGGCGGCCAGCTCAC
GGAGGCGGTGCGCAGGCGGCCGTACAGCGTCGTGCTGTTGGACGAGGTGGAGAAGGCGCACCCCGAGGTCTTCGACATCC
TCCTCCAGGTCCTGGACGACGGCCGCCTGACGGACGGGCAGGGCCGGACGGTCGACTTCCGCAACACCATCCTGATCCTC
ACGTCGAACCTGGGCAGCCAGTACCTGGTCGAGCCGATGACCTCCGACGAGGTGAAGAAGCAGCAGGTCCTCGAGGTCGT
ACGGGCCTCTTTCAAGCCGGAGTTCCTGAACCGGCTCGACGACCTGGTGGTCTTCTCCGCCCTGAACAAGGAGGAGCTGG
AGCGCATCGCCAGGCTCCAGATCGACAGGCTCGCCGGGCGCCTGGCCCAGCGGCGCCTCACCCTGGAGGTCACCGACGCG
GCCCTGGCCTGGCTCGCCGAGGAGGGCAACGACCCCGCCTACGGCGCCCGCCCCCTGCGCCGCCTCATCCAGACCGCCAT
CGGCGACCGTCTCGCCAAGGAGATCCTGGCGGGCGAGGTCAAGGACGGCGGCACGGTCCGGGTGGACGCCTTCGGGGACG
GGCTGATCGTGGGCCCGGCGACCGGGAAGACGCTGTAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• AAA lid domain (AAA_lid_9) (344-446)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.506	100	0.468
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.639	90.867	0.397
clpC	Lactococcus lactis subsp. cremoris KW2	47.323	79.884	0.378
clpE	Streptococcus mutans UA159	46.921	78.844	0.37