Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PTC84_RS04565 Genome accession   NZ_CP117750
Coordinates   960877..961503 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain 2022CK-00700     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 955877..966503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC84_RS04545 (PTC84_04545) - 956276..958036 (-) 1761 WP_273961685.1 Lon protease family protein -
  PTC84_RS04550 (PTC84_04550) matP 958223..958675 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  PTC84_RS04555 (PTC84_04555) ompA 958741..959793 (-) 1053 WP_017694761.1 porin OmpA -
  PTC84_RS04560 (PTC84_04560) sulA 960150..960659 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  PTC84_RS04565 (PTC84_04565) sxy/tfoX 960877..961503 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  PTC84_RS04570 (PTC84_04570) yccS 961460..963622 (-) 2163 WP_015570895.1 YccS family putative transporter -
  PTC84_RS04575 (PTC84_04575) - 963641..964087 (-) 447 WP_003858149.1 YccF domain-containing protein -
  PTC84_RS04580 (PTC84_04580) helD 964210..966264 (+) 2055 WP_273961686.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=787409 PTC84_RS04565 WP_017384804.1 960877..961503(+) (sxy/tfoX) [Enterobacter hormaechei strain 2022CK-00700]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=787409 PTC84_RS04565 WP_017384804.1 960877..961503(+) (sxy/tfoX) [Enterobacter hormaechei strain 2022CK-00700]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572