Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG382_RS34390 Genome accession   NZ_CP130722
Coordinates   7515859..7516839 (-) Length   326 a.a.
NCBI ID   WP_266744661.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7510859..7521839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS34375 (OG382_34420) - 7512123..7512830 (+) 708 WP_266744664.1 TetR/AcrR family transcriptional regulator -
  OG382_RS34380 (OG382_34425) - 7513032..7514426 (+) 1395 WP_266744663.1 FAD-binding oxidoreductase -
  OG382_RS34385 (OG382_34430) - 7515050..7515862 (-) 813 WP_266744662.1 ABC transporter ATP-binding protein -
  OG382_RS34390 (OG382_34435) amiE 7515859..7516839 (-) 981 WP_266744661.1 ABC transporter ATP-binding protein Regulator
  OG382_RS34395 (OG382_34440) - 7516845..7517732 (-) 888 WP_266744660.1 ABC transporter permease -
  OG382_RS34400 (OG382_34445) - 7517729..7518682 (-) 954 WP_266744659.1 ABC transporter permease -
  OG382_RS34405 (OG382_34450) - 7518682..7520310 (-) 1629 WP_266744658.1 ABC transporter substrate-binding protein -
  OG382_RS34410 (OG382_34455) - 7520447..7521547 (+) 1101 WP_266744657.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 34154.07 Da        Isoelectric Point: 6.6003

>NTDB_id=787389 OG382_RS34390 WP_266744661.1 7515859..7516839(-) (amiE) [Streptomyces sp. NBC_01238]
MTEYETPALEIDGLGIRLPGEQAARPILDGVSLRVGAGETVGLVGESGSGKSVACRSVLGLLPAGARTSGEVRVAGRDVL
TMKRAELAGLRARQVAMIFQDPRASVNPLRRVGDFLTEGLRGAGTPAAAAENRAEELLDAVGIRDPRGALRRYPHQFSGG
MLQRVVIAAALAGEPALLVADEPTTALDVTTQAEIIAILTRLQAARGTGMLFVTHDLELASAICDRVYVMYAGRIVETSS
TDALFDRPRHPYTAGLLACTPRIEAGAGAPRPIPGRPVSLAEAPPGCAFAARCAHAQPRCSEETPELAHHGDGLAACHRA
DEGIRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=787389 OG382_RS34390 WP_266744661.1 7515859..7516839(-) (amiE) [Streptomyces sp. NBC_01238]
ATGACCGAGTACGAAACCCCCGCGCTGGAGATCGACGGGCTCGGCATCCGCCTGCCCGGCGAGCAGGCGGCCCGTCCCAT
CCTCGACGGCGTCTCGCTGCGGGTCGGCGCAGGCGAGACGGTCGGCCTGGTCGGCGAGTCCGGTTCGGGCAAGTCGGTCG
CGTGCCGCAGCGTGCTCGGGCTGCTGCCGGCCGGGGCGCGCACGAGTGGTGAGGTGCGGGTGGCGGGCCGCGACGTCCTG
ACCATGAAGCGCGCCGAACTGGCCGGGCTGCGTGCCAGACAGGTCGCGATGATCTTCCAGGACCCGCGCGCGTCCGTGAA
CCCGCTGCGCCGCGTGGGCGACTTCCTCACCGAGGGACTGCGCGGTGCGGGCACGCCCGCCGCCGCGGCCGAGAACCGGG
CCGAGGAACTCCTCGACGCGGTGGGCATCCGCGATCCGCGGGGCGCGCTGCGCCGCTACCCGCACCAGTTCTCCGGCGGG
ATGCTCCAGCGCGTGGTCATCGCGGCCGCCCTCGCGGGCGAGCCGGCGCTGCTGGTCGCCGACGAGCCGACCACAGCTCT
CGACGTCACCACCCAGGCGGAGATCATCGCCATCCTCACCCGCCTCCAGGCCGCACGCGGCACCGGAATGCTCTTCGTCA
CCCACGACCTCGAACTGGCCTCGGCGATCTGCGACCGCGTGTACGTCATGTACGCGGGCCGGATCGTCGAAACCAGCAGC
ACCGACGCGCTGTTCGACCGTCCACGCCACCCGTACACGGCGGGGCTCCTCGCCTGCACACCTCGCATCGAGGCCGGAGC
CGGCGCCCCACGCCCCATCCCGGGCAGGCCCGTCTCCCTCGCCGAGGCCCCACCGGGGTGTGCCTTCGCGGCGCGCTGCG
CCCACGCGCAGCCGCGCTGTTCCGAGGAGACACCCGAACTTGCGCACCACGGCGACGGACTCGCCGCGTGCCACCGCGCC
GACGAAGGGATCAGACTGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-300)

ABC transporter (ABC_tran)

(28-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42.908

86.503

0.371
  amiE Streptococcus thermophilus LMD-9

42.908

86.503

0.371
  amiE Streptococcus salivarius strain HSISS4

42.553

86.503

0.368
  oppD Streptococcus mutans UA159

39.597

91.411

0.362