Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG382_RS13170 Genome accession   NZ_CP130722
Coordinates   2920152..2921198 (-) Length   348 a.a.
NCBI ID   WP_266748331.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2915152..2926198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS13155 (OG382_13155) - 2916126..2917766 (-) 1641 WP_266748334.1 ABC transporter substrate-binding protein -
  OG382_RS13160 (OG382_13160) - 2918357..2918893 (+) 537 WP_266748333.1 hypothetical protein -
  OG382_RS13165 (OG382_13165) - 2919014..2920159 (-) 1146 WP_266748332.1 ABC transporter ATP-binding protein -
  OG382_RS13170 (OG382_13170) amiE 2920152..2921198 (-) 1047 WP_266748331.1 ABC transporter ATP-binding protein Regulator
  OG382_RS13175 (OG382_13175) - 2921250..2922173 (-) 924 WP_266748330.1 ABC transporter permease -
  OG382_RS13180 (OG382_13180) - 2922207..2923133 (-) 927 WP_266748329.1 ABC transporter permease -
  OG382_RS13185 (OG382_13185) - 2923317..2924972 (-) 1656 WP_266748328.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37556.31 Da        Isoelectric Point: 6.1785

>NTDB_id=787347 OG382_RS13170 WP_266748331.1 2920152..2921198(-) (amiE) [Streptomyces sp. NBC_01238]
MTSAETAGVGSGPAEAAPLLEVRDLHVEFKVRDTVTKAVNGVSYSVNAGETLAVLGESGSGKSVTAQAIMGILDSPPGRI
AGGEIFFHGQEILSMPESERRKLRGAKMAMIFQDALSSLNPVLSVGFQLGEMFRSHLGMSRKDAKAKAIEMMDRVRIPAA
KQRVGDYPHEFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMELLAELQRELDMGLILITHDLGVVADVADK
IAVMYAGRIVENSPVHEIYKRPAHPYTKGLLQSIPRLDHKGQELYAIKGLPPNLQNIPAGCAFNPRCSAAQDICRTDIPV
LSPVTEQDGTELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=787347 OG382_RS13170 WP_266748331.1 2920152..2921198(-) (amiE) [Streptomyces sp. NBC_01238]
ATGACCAGCGCCGAGACAGCCGGCGTCGGCAGCGGACCGGCCGAGGCCGCACCGTTGCTCGAAGTCCGGGACCTCCACGT
GGAGTTCAAGGTCCGCGACACCGTGACCAAGGCGGTCAACGGTGTCAGTTACAGCGTGAACGCGGGCGAGACCCTCGCCG
TGCTCGGTGAGTCCGGATCGGGCAAGTCCGTCACCGCGCAAGCGATCATGGGCATTCTGGACAGCCCGCCCGGTCGCATC
GCGGGTGGCGAGATCTTCTTCCATGGCCAGGAGATCCTGTCCATGCCGGAGAGCGAGCGCCGCAAACTGCGCGGCGCCAA
GATGGCGATGATCTTCCAGGACGCACTGTCCTCGCTCAACCCGGTTCTCTCCGTGGGCTTCCAGCTCGGTGAGATGTTCC
GGTCGCACCTCGGCATGTCCCGCAAGGACGCCAAGGCCAAGGCCATCGAGATGATGGACCGGGTGCGTATTCCGGCCGCG
AAGCAGCGCGTCGGGGACTACCCCCACGAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCGCTCGCCCT
GGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCGCAGGTGATGGAGCTCCTCG
CGGAGCTCCAGCGCGAGCTCGACATGGGTCTGATCCTGATCACCCACGACCTGGGTGTGGTGGCGGACGTCGCCGACAAG
ATCGCCGTGATGTACGCGGGCCGGATCGTCGAGAACTCCCCGGTCCACGAGATCTACAAGCGCCCCGCCCACCCGTACAC
CAAGGGACTGCTCCAGTCGATCCCGCGCCTGGACCACAAGGGCCAGGAGCTGTACGCGATCAAGGGCCTCCCGCCCAACC
TGCAGAACATCCCGGCGGGCTGTGCGTTCAACCCGCGCTGCTCCGCCGCGCAGGACATCTGCCGTACGGACATTCCGGTG
CTCAGCCCGGTGACCGAGCAGGACGGCACCGAGCTGGTCGGCCGCGGCAGCGCCTGCCACTTCTGGAAGGAGACGATCCA
TGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(250-314)

ABC transporter (ABC_tran)

(40-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50

85.057

0.425
  amiE Streptococcus thermophilus LMG 18311

49.324

85.057

0.42
  amiE Streptococcus thermophilus LMD-9

49.324

85.057

0.42
  oppD Streptococcus mutans UA159

45.779

88.506

0.405