Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG382_RS13140 Genome accession   NZ_CP130722
Coordinates   2913124..2914101 (-) Length   325 a.a.
NCBI ID   WP_266748337.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908124..2919101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS13120 (OG382_13120) - 2908162..2908356 (-) 195 WP_093896879.1 hypothetical protein -
  OG382_RS13125 (OG382_13125) - 2908531..2910663 (+) 2133 WP_266748340.1 prolyl oligopeptidase family serine peptidase -
  OG382_RS13130 (OG382_13130) - 2910690..2911691 (-) 1002 WP_266905530.1 hypothetical protein -
  OG382_RS13135 (OG382_13135) - 2911890..2913134 (-) 1245 WP_266748338.1 ABC transporter ATP-binding protein -
  OG382_RS13140 (OG382_13140) amiE 2913124..2914101 (-) 978 WP_266748337.1 ABC transporter ATP-binding protein Regulator
  OG382_RS13145 (OG382_13145) - 2914115..2915089 (-) 975 WP_266748336.1 ABC transporter permease -
  OG382_RS13150 (OG382_13150) - 2915082..2916005 (-) 924 WP_266748335.1 ABC transporter permease -
  OG382_RS13155 (OG382_13155) - 2916126..2917766 (-) 1641 WP_266748334.1 ABC transporter substrate-binding protein -
  OG382_RS13160 (OG382_13160) - 2918357..2918893 (+) 537 WP_266748333.1 hypothetical protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36061.95 Da        Isoelectric Point: 6.7674

>NTDB_id=787346 OG382_RS13140 WP_266748337.1 2913124..2914101(-) (amiE) [Streptomyces sp. NBC_01238]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGKISGGEILFKDRDLLKMKK
DERRKIRGQEMAMIFQDALSSLNPVLSVGEQLGEMFVVHRGMSHKDARRKAVELMDRVRIPAARERVGNYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADYIAVMYAGRIVETAPVHE
IYRAPAHPYTKGLLRSIPRLDQKGQELYAIKGLPPNLLRIPPGCAFHPRCPMAQEICRGEVPPLFEVAENRESACYFWRE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=787346 OG382_RS13140 WP_266748337.1 2913124..2914101(-) (amiE) [Streptomyces sp. NBC_01238]
ATGTTGCTCGAAGTGCGCGATCTTCACGTGGAGTTCCACACCCGCGACGGGGTGGCCAAAGCCGTCAATGGGGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTGGCCGTCCTCGGCGAATCGGGCTCCGGCAAGTCGGTCACCGCGCAGGCCGTCATGG
GCATCCTCGACATGCCCCCCGGGAAGATCAGCGGCGGCGAGATCCTTTTCAAGGACCGGGACCTGCTGAAGATGAAGAAG
GACGAACGCCGGAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCTCTCTCCTCGCTCAACCCCGTGCTCAG
CGTGGGGGAGCAGCTCGGCGAGATGTTCGTCGTCCACCGCGGGATGTCCCACAAGGACGCCAGGCGCAAGGCCGTCGAAC
TGATGGACCGGGTCCGCATCCCGGCCGCGAGGGAACGCGTCGGGAACTATCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCCTCGCTGATCATCGCCGACGAACCCACCACCGCCCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCCGAGCTCCAGCGCGAACTGAACATGGGCCTGATCCTGATCACCCACGACC
TCGGCGTGGTCGCGGACGTCGCCGATTACATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAG
ATCTACCGGGCACCCGCCCACCCGTACACCAAGGGTCTGCTCCGGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTGCTGCGCATCCCGCCCGGCTGCGCCTTCCACCCGCGCTGCCCGATGGCCC
AGGAGATCTGCCGGGGCGAGGTACCGCCGCTGTTCGAGGTGGCCGAGAACCGCGAGAGCGCCTGCTATTTCTGGAGGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.729

98.769

0.462
  amiE Streptococcus thermophilus LMG 18311

46.417

98.769

0.458
  amiE Streptococcus thermophilus LMD-9

46.417

98.769

0.458
  oppD Streptococcus mutans UA159

46.835

97.231

0.455