Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG382_RS10730 Genome accession   NZ_CP130722
Coordinates   2371206..2372225 (-) Length   339 a.a.
NCBI ID   WP_266748817.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2366206..2377225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS10720 (OG382_10720) - 2368279..2369655 (-) 1377 WP_266748819.1 hypothetical protein -
  OG382_RS10725 (OG382_10725) - 2369730..2371148 (-) 1419 WP_405680800.1 GH1 family beta-glucosidase -
  OG382_RS10730 (OG382_10730) amiE 2371206..2372225 (-) 1020 WP_266748817.1 ABC transporter ATP-binding protein Regulator
  OG382_RS10735 (OG382_10735) - 2372222..2373220 (-) 999 WP_266748816.1 ABC transporter permease -
  OG382_RS10740 (OG382_10740) - 2373224..2374204 (-) 981 WP_266748815.1 ABC transporter permease -
  OG382_RS10745 (OG382_10745) - 2374201..2375364 (-) 1164 WP_405680803.1 ABC transporter ATP-binding protein -
  OG382_RS10750 (OG382_10750) - 2375386..2377059 (-) 1674 WP_371665701.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36747.09 Da        Isoelectric Point: 6.6452

>NTDB_id=787336 OG382_RS10730 WP_266748817.1 2371206..2372225(-) (amiE) [Streptomyces sp. NBC_01238]
MSSEPVLSIRGLNVDYGTGDDAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHRRDGEA
LDLLTLSAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPDLKRTERTDRAKELLGLVGISADRLAAYPHQ
LSGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVRLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIV
EEAGASAIYQDPHHPYSDGLLHSFPALHGPRRELTGIPGSPPHLTAMPAGCSFHPRCGKALDACAAHVPVLAAPDGDDSR
TVACWLHRPAPAAATPPRS

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=787336 OG382_RS10730 WP_266748817.1 2371206..2372225(-) (amiE) [Streptomyces sp. NBC_01238]
ATGAGCAGCGAGCCCGTCCTCAGCATCCGTGGTCTGAACGTGGACTACGGCACCGGGGACGACGCCGTGCACGCGCTGCG
CGACATCGACCTCACCCTGCACCGGGGCGAGGTCCTGGGCCTGGCGGGCGAGTCCGGGTCCGGCAAGTCCACGCTGGCGT
ACGCCGTCACCCGGCTGCTCTCGCCGCCCGGGGTGATCACCGGCGGCGAGGTCCACTACCACCGGCGGGACGGCGAGGCG
CTCGACCTGCTGACCCTGTCGGCCCCCGAGCTGAGGGCCTTCCGCTGGCAGGAGCTGTCGATCGTCTTCCAGGGCGCGAT
GAACTCGCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTACTCAAGGCCCACCGCCCCGACCTGAAACGGA
CCGAACGGACCGACCGGGCCAAGGAGTTGCTGGGCCTGGTCGGCATCTCCGCCGACCGGCTCGCCGCCTACCCGCACCAG
CTCTCCGGCGGGATGCGCCAGCGGGTGATGATCGCGATGGCGCTCGCGCTGGAGCCCGAGATCGTCATCATGGACGAACC
GACGACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAACTGGTCAGGCTCCGCGAGGAGCTGGGCTTCTCGG
TCGTCTTCATCACCCACGACATCTCGCTGCTGATCGAGTTCTCCGACCGGATCGCGATCATGTACGGCGGCCGGATCGTC
GAGGAGGCCGGCGCCTCCGCCATCTATCAGGACCCCCACCACCCGTACAGCGATGGCCTGTTGCACTCCTTCCCGGCACT
GCACGGCCCCCGCCGCGAACTCACCGGCATCCCCGGCTCGCCCCCGCACCTGACCGCGATGCCCGCCGGCTGCTCCTTCC
ACCCCCGCTGCGGCAAGGCGCTCGACGCCTGCGCCGCCCATGTCCCGGTGCTCGCCGCGCCGGACGGAGACGACTCGCGC
ACGGTGGCCTGCTGGCTCCACCGGCCGGCCCCCGCCGCCGCGACGCCACCCCGCTCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-188)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

39.104

98.82

0.386
  amiE Streptococcus thermophilus LMD-9

39.104

98.82

0.386
  amiE Streptococcus salivarius strain HSISS4

38.806

98.82

0.383
  oppD Streptococcus mutans UA159

36.765

100

0.369