Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG382_RS10375 Genome accession   NZ_CP130722
Coordinates   2304562..2306778 (-) Length   738 a.a.
NCBI ID   WP_266748889.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2299562..2311778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS10345 (OG382_10345) rnc 2300131..2300955 (-) 825 WP_266748896.1 ribonuclease III -
  OG382_RS10350 (OG382_10350) rpmF 2300975..2301148 (-) 174 WP_003965982.1 50S ribosomal protein L32 -
  OG382_RS10355 (OG382_10355) - 2301151..2301822 (-) 672 WP_266748894.1 DUF177 domain-containing protein -
  OG382_RS10360 (OG382_10360) - 2302001..2303086 (-) 1086 WP_266748892.1 cell division initiation protein -
  OG382_RS10365 (OG382_10365) coaD 2303196..2303675 (-) 480 WP_266752491.1 pantetheine-phosphate adenylyltransferase -
  OG382_RS10370 (OG382_10370) rsmD 2303702..2304286 (-) 585 WP_266748891.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG382_RS10375 (OG382_10375) recG 2304562..2306778 (-) 2217 WP_266748889.1 ATP-dependent DNA helicase RecG Machinery gene
  OG382_RS10380 (OG382_10380) - 2306893..2308512 (-) 1620 WP_266748888.1 DAK2 domain-containing protein -
  OG382_RS10385 (OG382_10385) rpmB 2308773..2308958 (+) 186 WP_030928661.1 50S ribosomal protein L28 -
  OG382_RS10390 (OG382_10390) thiD 2309045..2309851 (-) 807 WP_266748886.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OG382_RS10395 (OG382_10395) - 2309861..2310832 (-) 972 WP_266748885.1 thiamine-phosphate kinase -
  OG382_RS10400 (OG382_10400) - 2311160..2311393 (+) 234 WP_072487263.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80201.93 Da        Isoelectric Point: 6.3880

>NTDB_id=787334 OG382_RS10375 WP_266748889.1 2304562..2306778(-) (recG) [Streptomyces sp. NBC_01238]
MDRVSAFDEPLKKLLGGATAKVMADHLDLHTVGDLLHHYPRRYEERGRLTALTDLPLDEHVTVVAQVADARVVMFNNGRG
KRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRRAMFAGKVSVFNRKMQLAHPTYQLLDAESIDGAEATEAVDAFAGRL
LPIYPACKQLDSWRIAKAVDTVLPSAREAVDPLPPSLCEGRGFIPLPEALLKVHRPQTKADIAQARDRLKWDEAFVLQVA
LARRRYADTQLPAVARKPAHGGLLDAFDAKLPFTLTEGQRKVSQEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLGVV
DAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDLGTKVVLLTGSMGMAARRQALLDLVTGEAGIVIGTHALIE
DKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQQPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAK
DKPHFLSRAWERVREEVESGHQAYVVCPRIGDDAEDETAGKKGKKKAPEDDGEKRPPLAVLEIAEQLAKGPLTGLRVEVL
HGRMNPDDKDDVMRRFGAGQVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEA
SPARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAARAEAAAIVTADPELEHLPELR
TALDALLDKEREQYLDKG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=787334 OG382_RS10375 WP_266748889.1 2304562..2306778(-) (recG) [Streptomyces sp. NBC_01238]
ATGGATCGCGTGTCTGCGTTCGATGAACCCCTCAAGAAGCTGCTCGGCGGAGCCACCGCGAAGGTGATGGCCGACCATCT
CGACCTGCACACGGTCGGTGATCTGCTGCACCACTACCCGCGGCGGTACGAGGAGCGCGGCCGGCTCACGGCGCTGACCG
ACCTCCCGCTGGACGAGCATGTGACGGTGGTCGCCCAGGTCGCCGACGCCCGCGTCGTGATGTTCAACAACGGCCGCGGC
AAGCGCCTCGAAGTGACCCTCACCGACGGCAGTGGCCGCCTCCAGCTCGTCTTCTTCGGCCATGGCGTCCACAAGCCGCA
CAAGGAACTGCTGCCGGGCCGAAGGGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGCAAGATGCAGCTGGCCCATC
CCACGTACCAGCTGCTGGACGCCGAGTCCATCGACGGGGCCGAGGCCACGGAAGCGGTGGACGCCTTCGCCGGGCGGCTG
CTGCCGATCTACCCGGCCTGCAAGCAGCTGGACTCGTGGCGGATCGCCAAGGCCGTCGACACCGTGCTGCCCAGCGCGCG
GGAGGCCGTCGACCCGCTGCCGCCGAGCCTGTGCGAGGGGCGCGGGTTCATCCCGCTCCCGGAGGCGTTGCTGAAGGTGC
ACCGTCCGCAGACCAAGGCGGACATCGCCCAGGCCAGGGACCGGCTGAAGTGGGACGAGGCATTCGTCCTCCAGGTCGCA
CTGGCCCGCCGCAGATACGCGGACACCCAGCTCCCGGCGGTCGCCCGGAAACCCGCCCACGGCGGACTGCTCGACGCCTT
CGACGCGAAGCTGCCGTTCACCCTCACCGAGGGGCAGCGGAAAGTCTCCCAGGAGATCTTCGACGACCTGGCGACCGAGC
ACCCGATGCACCGGCTTCTCCAGGGGGAGGTGGGCAGCGGGAAGACCATGGTCGCGCTGCGCGCGATGCTCGGCGTCGTC
GACGCGGGCGGACAGGCCGCCATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCCATCACGGAAATGAT
GGGCGAGCTGGCCGAGGGCGGAATGCTGGGCGGCTCCGACCTCGGTACGAAGGTGGTGCTGCTGACCGGGTCCATGGGGA
TGGCGGCCCGCCGTCAGGCGCTGCTCGACCTCGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCACGCGCTGATCGAG
GACAAGGTGCAGTTCCACGACCTGGGCCTGGTCGTCGTCGACGAACAGCACCGCTTCGGGGTGGAACAACGCGACGCGCT
CCGGTCCAAGGGGAAGCAGCAGCCGCACCTGCTGGTCATGACCGCCACCCCCATTCCCCGTACGGTCGCCATGACCGTCT
TCGGTGACCTGGAGACCTCCGTGCTGGACCAGCTGCCCGCCGGCCGTTCCCCGATCGCCAGCCACGTCGTCCCCGCCAAG
GACAAACCGCACTTCCTCAGCCGCGCCTGGGAACGGGTCCGGGAAGAAGTGGAAAGCGGACACCAGGCCTACGTGGTCTG
CCCCCGCATCGGCGACGACGCCGAGGACGAGACGGCAGGGAAGAAGGGGAAGAAGAAGGCACCCGAGGACGACGGTGAGA
AGCGCCCTCCGCTCGCCGTCCTGGAGATCGCCGAACAGCTCGCCAAGGGCCCGCTCACCGGGCTGCGCGTCGAGGTGCTG
CACGGCAGGATGAACCCCGACGACAAGGACGACGTGATGCGCCGCTTCGGCGCGGGCCAGGTCGACGTCCTCGTCGCCAC
CACCGTCATCGAGGTCGGGGTCAATGTCCCCAACGCCACCGCGATGGTCATCATGGACGCCGACCGGTTCGGGGTCTCCC
AGCTGCACCAGCTGCGCGGCCGGGTCGGCCGCGGCTCCGCCCCCGGACTCTGCCTGCTGGTCAGCGAGGCCCACGAGGCG
AGTCCGGCCCGCGCCCGGCTGTCGGCCGTCGCCGCCACGCTCGACGGCTTCGAACTGTCCCGGATCGACCTCGAGCAGCG
CCGTGAGGGCGATGTCCTCGGCCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGATGCTCACCGTCATCGACGACGAGG
AGGTCATCGCCGCCGCCCGCGCGGAGGCCGCGGCGATCGTCACCGCCGACCCGGAGCTGGAACACCTGCCGGAGCTGCGG
ACCGCGCTGGACGCGCTGCTCGACAAGGAGCGCGAGCAGTACCTCGACAAGGGGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(297-449)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-139)

Helicase conserved C-terminal domain (Helicase_C)

(549-625)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-715)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38

94.851

0.36