Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG299_RS26445 Genome accession   NZ_CP130720
Coordinates   5821243..5822976 (-) Length   577 a.a.
NCBI ID   WP_327362830.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5816243..5827976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS26425 (OG299_26450) - 5816462..5817400 (-) 939 WP_266629464.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG299_RS26430 (OG299_26455) - 5817397..5817978 (-) 582 WP_327362828.1 hypothetical protein -
  OG299_RS26435 (OG299_26460) - 5818153..5819238 (+) 1086 WP_327362829.1 RNA polymerase sigma factor -
  OG299_RS26440 (OG299_26465) rcrQ 5819324..5821246 (-) 1923 WP_266629468.1 ABC transporter ATP-binding protein Regulator
  OG299_RS26445 (OG299_26470) rcrP 5821243..5822976 (-) 1734 WP_327362830.1 ABC transporter ATP-binding protein Regulator
  OG299_RS26450 (OG299_26475) - 5823135..5824589 (-) 1455 WP_266629472.1 FGGY family carbohydrate kinase -
  OG299_RS26455 (OG299_26480) - 5824674..5824976 (-) 303 WP_266629474.1 YtxH domain-containing protein -
  OG299_RS26475 (OG299_26500) - 5825973..5826206 (+) 234 WP_327362831.1 type II toxin-antitoxin system VapB family antitoxin -
  OG299_RS26480 (OG299_26505) - 5826203..5826610 (+) 408 WP_327362832.1 PIN domain nuclease -
  OG299_RS26485 (OG299_26510) - 5826639..5827229 (-) 591 WP_327362833.1 CHAT domain-containing protein -
  OG299_RS26490 (OG299_26515) - 5827608..5827754 (+) 147 WP_327362834.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62419.38 Da        Isoelectric Point: 5.1520

>NTDB_id=787292 OG299_RS26445 WP_327362830.1 5821243..5822976(-) (rcrP) [Streptomyces sp. NBC_01296]
MLIRLLRTHLSPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRSGALMLGVSLVQLGCNVGAVYFGA
RTAAAVGRDIRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGV
LLAVVPVLGLSVGAIVFRTRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PVDPVRGLLTRGQLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGHVLVDGEDVR
RIEPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWHALEVAQARDFVAELEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQSPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=787292 OG299_RS26445 WP_327362830.1 5821243..5822976(-) (rcrP) [Streptomyces sp. NBC_01296]
GTGCTCATACGACTTCTGCGGACCCATCTGAGTCCGTACCGGAAACCGATCGCCCTCCTGGTCCTGCTGCAACTGCTGCA
GACCAGTGCGAGCCTCTACCTCCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAGCGGGGACACCGGCTACA
TCCTGCGCTCCGGCGCCCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGGGTGCAACGTCGGCGCCGTCTACTTCGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACATCCGTGCGTCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
ACAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCCGCGCCGATCATGTGCATCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTGGCCGTGGTCCCCGTCCTCGGCCTGTCGGTCGGCGCGATCGTCTTCAGGACGCGGCCGCTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTCCGCGACG
ACTACGAGAAGGATCGGTTCCGCGAGGCCAACGCGGACCTGACCGGGGTCTCCCTCGCGGCCGGCAAGCTGCTCGCCCTG
ATGTTCCCGACCGTGATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGTGTCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGTCGACCCGGTGCGGGGGCTCCTCACCCGCGGGCAACTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTGCCGCGGCTGTTCGACGCGACCGGCGGCCACGTGCTGGTCGACGGGGAGGACGTACGC
CGCATCGAGCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGGTACGGGCGTCCCGACGCCACCGACGAGGAGCTGTGGCACGCGCTCGAGGTGGCGCAGGCCAGGGACTTCG
TGGCCGAGCTGGAGGGCGGTCTGGACGCGCCCGTCACCCAGGGCGGAACGAACGTCTCCGGAGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTGGTGCAGAGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGTGAGACCGAGGACGCGACGGTGGTCATCGTCGCGCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTGCTGGACGAGGGCCAGGTCGTCGGCGAGGGGCGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.683

98.267

0.39