Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG299_RS26440 Genome accession   NZ_CP130720
Coordinates   5819324..5821246 (-) Length   640 a.a.
NCBI ID   WP_266629468.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5814324..5826246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS26420 (OG299_26445) - 5814376..5816454 (+) 2079 WP_327362827.1 molybdopterin oxidoreductase family protein -
  OG299_RS26425 (OG299_26450) - 5816462..5817400 (-) 939 WP_266629464.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG299_RS26430 (OG299_26455) - 5817397..5817978 (-) 582 WP_327362828.1 hypothetical protein -
  OG299_RS26435 (OG299_26460) - 5818153..5819238 (+) 1086 WP_327362829.1 RNA polymerase sigma factor -
  OG299_RS26440 (OG299_26465) rcrQ 5819324..5821246 (-) 1923 WP_266629468.1 ABC transporter ATP-binding protein Regulator
  OG299_RS26445 (OG299_26470) rcrP 5821243..5822976 (-) 1734 WP_327362830.1 ABC transporter ATP-binding protein Regulator
  OG299_RS26450 (OG299_26475) - 5823135..5824589 (-) 1455 WP_266629472.1 FGGY family carbohydrate kinase -
  OG299_RS26455 (OG299_26480) - 5824674..5824976 (-) 303 WP_266629474.1 YtxH domain-containing protein -
  OG299_RS26475 (OG299_26500) - 5825973..5826206 (+) 234 WP_327362831.1 type II toxin-antitoxin system VapB family antitoxin -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68912.48 Da        Isoelectric Point: 5.4166

>NTDB_id=787291 OG299_RS26440 WP_266629468.1 5819324..5821246(-) (rcrQ) [Streptomyces sp. NBC_01296]
MSGPGGRMMMGPAERSLDFKSSGKRLLRQIAHDRTKLWGMVVAVVGSVGCSVIGPKILGEATDLVFAGIVGRQMPAGITK
QQALDGLRAKGEGGMADMLSGTDFTPGEGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHIMNGTVYRMREELQGKLS
RLPLSYFDRQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMLWISPLLALVALLTIPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHALVKVFGRQKESAALFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLVAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAQEQEPDTAVPERPEQLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLAADGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=787291 OG299_RS26440 WP_266629468.1 5819324..5821246(-) (rcrQ) [Streptomyces sp. NBC_01296]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCGAGCGGTCCCTGGATTTCAAGAGCTCGGGCAAACGGCTGCT
GCGCCAGATCGCGCACGACCGGACCAAGCTGTGGGGCATGGTCGTCGCCGTCGTCGGCAGCGTCGGCTGCTCGGTCATCG
GCCCGAAGATCCTCGGCGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGCAGATGCCGGCCGGGATCACCAAG
CAACAGGCGCTGGACGGGCTGCGCGCCAAGGGCGAGGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCCGG
CGAGGGCATCGACTTCGGTGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTCGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTGCAGGGGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGCAAAAGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGG
GCAGACGCTGCAGCAGACGATGGGTCAGCTGCTCAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGCTCTGGA
TCTCTCCGCTGCTGGCGCTGGTCGCCCTGCTGACCATTCCCGTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCGCTCAACGCGCACATCGAGGAGATGTACTCGGGCCACGCGCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCGCTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTCG
ACGCGCAGGAGCAGGAGCCGGACACCGCGGTGCCGGAGCGGCCGGAGCAGCTTCGGGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGGTACGAGCCGGACAAGCCGCTGATCGAGAACCTGTCGCTGACCGTCGAGCCCGGCCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCAGCGGGATCGGCATGGTGCTCCAGGACACGTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGATGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGGCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAT
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389