Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG299_RS14935 Genome accession   NZ_CP130720
Coordinates   3359995..3360969 (-) Length   324 a.a.
NCBI ID   WP_327361731.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3354995..3365969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS14915 (OG299_14930) - 3357070..3357453 (-) 384 WP_327361730.1 DUF6113 family protein -
  OG299_RS14920 (OG299_14935) mshB 3357450..3358346 (-) 897 WP_266625814.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  OG299_RS14925 (OG299_14940) - 3358371..3358565 (-) 195 WP_030291103.1 hypothetical protein -
  OG299_RS14930 (OG299_14945) - 3358932..3360002 (-) 1071 WP_266625816.1 dipeptide ABC transporter ATP-binding protein -
  OG299_RS14935 (OG299_14950) amiE 3359995..3360969 (-) 975 WP_327361731.1 ABC transporter ATP-binding protein Regulator
  OG299_RS14940 (OG299_14955) - 3360981..3362009 (-) 1029 WP_327361732.1 ABC transporter permease -
  OG299_RS14945 (OG299_14960) - 3362002..3362925 (-) 924 WP_266664115.1 ABC transporter permease -
  OG299_RS14950 (OG299_14965) - 3362956..3364590 (-) 1635 WP_266625820.1 ABC transporter substrate-binding protein -
  OG299_RS14955 (OG299_14970) - 3364697..3365626 (-) 930 WP_327361733.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35065.83 Da        Isoelectric Point: 6.2472

>NTDB_id=787261 OG299_RS14935 WP_327361731.1 3359995..3360969(-) (amiE) [Streptomyces sp. NBC_01296]
MLLEVRDLHVEFRTRDGVAKAVNGVNYSVDEGETLAVLGESGSGKSVTAQAVMGILDVPPGRIAGGEILFKGKDLLKMKE
EERRKIRGADMAMIFQDALSSLNPVLSVGTQLGEMYEVHRGMSRKAAKAKAVELMDRVKIPAAKDRVGDYPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVEAAPVHE
IYAAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLNIPPGCAFNPRCPMAQAVCRTDVPPLAQVGQDRASACFFWKE
CLGG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=787261 OG299_RS14935 WP_327361731.1 3359995..3360969(-) (amiE) [Streptomyces sp. NBC_01296]
ATGCTGCTCGAAGTCCGCGACCTCCATGTGGAGTTCCGTACGCGGGACGGAGTCGCCAAGGCCGTCAACGGTGTCAACTA
CTCGGTGGACGAGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCGGGCAAGTCGGTGACGGCCCAGGCCGTGATGG
GCATCCTGGACGTGCCGCCGGGCCGGATCGCGGGCGGCGAGATCCTCTTCAAGGGCAAGGACCTGCTGAAGATGAAGGAG
GAGGAGCGGCGGAAGATCCGCGGCGCCGACATGGCGATGATCTTCCAGGACGCCCTGTCCTCCCTGAACCCCGTGCTCAG
CGTGGGCACCCAGCTGGGCGAGATGTACGAGGTCCACCGCGGGATGTCCCGCAAGGCGGCCAAGGCCAAGGCCGTCGAGC
TGATGGACCGGGTGAAGATCCCGGCGGCGAAGGACCGCGTGGGGGACTACCCGCACCAGTTCTCGGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGCTGGCCCTGGAGCCCTCCCTGATCATCGCGGACGAGCCGACGACGGCCCTGGACGTCAC
CGTCCAAGCCCAGGTGATGGACCTGCTGGCCGAGCTCCAGCGCGAGCTCAACATGGGGCTCATCCTCATCACCCACGACC
TCGGGGTGGTCGCGGACGTCGCCGACAAGATCGCCGTCATGTACGCGGGCCGGATCGTCGAGGCGGCCCCCGTCCACGAG
ATCTACGCCGCGCCCGCCCATCCGTACACCCGCGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
CTACGCGATCAAGGGCCTGCCGCCCAACCTGCTGAACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCAC
AGGCGGTCTGCCGCACCGACGTCCCGCCGCTCGCGCAGGTGGGCCAAGACCGCGCGAGCGCGTGCTTCTTCTGGAAGGAG
TGCCTCGGTGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.975

99.074

0.475
  amiE Streptococcus thermophilus LMG 18311

47.975

99.074

0.475
  amiE Streptococcus thermophilus LMD-9

47.975

99.074

0.475
  oppD Streptococcus mutans UA159

47.152

97.531

0.46