Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG299_RS12650 Genome accession   NZ_CP130720
Coordinates   2866475..2868685 (-) Length   736 a.a.
NCBI ID   WP_266636396.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2861475..2873685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS12620 (OG299_12630) rnc 2862275..2863135 (-) 861 WP_266636390.1 ribonuclease III -
  OG299_RS12625 (OG299_12635) rpmF 2863155..2863328 (-) 174 WP_003965982.1 50S ribosomal protein L32 -
  OG299_RS12630 (OG299_12640) - 2863331..2863996 (-) 666 WP_327361544.1 DUF177 domain-containing protein -
  OG299_RS12635 (OG299_12645) - 2864119..2865168 (-) 1050 WP_266636392.1 ATP synthase F0 subunit B -
  OG299_RS12640 (OG299_12650) coaD 2865272..2865751 (-) 480 WP_266636449.1 pantetheine-phosphate adenylyltransferase -
  OG299_RS12645 (OG299_12655) rsmD 2865766..2866344 (-) 579 WP_266636394.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG299_RS12650 (OG299_12660) recG 2866475..2868685 (-) 2211 WP_266636396.1 ATP-dependent DNA helicase RecG Machinery gene
  OG299_RS12655 (OG299_12665) - 2868702..2870393 (-) 1692 WP_327361546.1 DAK2 domain-containing protein -
  OG299_RS12660 (OG299_12670) rpmB 2870643..2870828 (+) 186 WP_266636400.1 50S ribosomal protein L28 -
  OG299_RS12665 (OG299_12675) thiD 2870998..2871801 (-) 804 WP_266636402.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OG299_RS12670 (OG299_12680) - 2871798..2872781 (-) 984 WP_030298509.1 thiamine-phosphate kinase -
  OG299_RS12675 (OG299_12685) - 2873026..2873259 (+) 234 WP_266636406.1 Lrp/AsnC ligand binding domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79685.34 Da        Isoelectric Point: 6.1478

>NTDB_id=787253 OG299_RS12650 WP_266636396.1 2866475..2868685(-) (recG) [Streptomyces sp. NBC_01296]
MVCNEHVPALDEDLKKTLGPATAKVLAEQLGLHTALDLLHHYPRRYAERGELTSLAELADQIDEHVTVVAQVADARILTF
NGGRGKRLEVTITDGSGRLQLVFFGAGVHKPHKDLLPGTRAMFAGKVGMFNRKLQLSHPAYEPLGADASDRDAATAFANQ
LIPIYPACAKLESWKVAKCVDAVLPSAHEAVDPLPDALREGRGLVPLTEALLKIHRPGTKADIDDARQRLKWDEAFVLQV
ALARRRHADSQLPAVPRRPAPGGLLDAFDAKLPFTLTEGQQTVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAV
VDCGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVVLLTGSMGMPARRQALLDLVTGEAGIVIGTHALI
EDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPA
KDKPHFLTRAWERVREEVGNGHQAYVVCPRIGDGEDDPKNPKKKTAEDDGEKRPPLAVLEIAEQLTRGPLAGLSVEVLHG
RMDPADKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMHEASP
ARARLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEVIAQAREEAARVVAADPELERLPGLRSA
LEALLDTEREQYLEKG

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=787253 OG299_RS12650 WP_266636396.1 2866475..2868685(-) (recG) [Streptomyces sp. NBC_01296]
ATGGTGTGCAATGAACACGTGCCCGCGCTCGACGAAGACCTCAAGAAGACGCTCGGCCCCGCCACCGCCAAGGTGCTGGC
CGAGCAGCTCGGCCTGCACACGGCCCTGGACCTGCTCCACCACTACCCGCGGCGGTACGCCGAGCGCGGGGAGCTGACCT
CCCTGGCGGAGCTCGCGGACCAGATCGACGAGCACGTGACGGTGGTCGCCCAGGTCGCCGACGCCCGGATCCTGACGTTC
AACGGGGGCCGCGGCAAACGCCTGGAGGTGACCATCACCGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGGGCGGG
CGTCCACAAGCCCCACAAGGACCTGCTCCCGGGCACCCGCGCCATGTTCGCGGGCAAGGTCGGCATGTTCAACCGCAAGC
TCCAGCTCTCCCACCCCGCGTACGAGCCGCTCGGGGCGGACGCCTCCGACCGGGACGCCGCCACCGCCTTCGCGAACCAG
CTGATCCCGATCTACCCGGCCTGCGCCAAGCTGGAGTCCTGGAAGGTCGCCAAATGCGTGGACGCCGTACTGCCCAGCGC
CCATGAGGCCGTGGACCCGCTGCCGGACGCACTGCGCGAGGGCCGCGGACTGGTCCCCCTCACCGAGGCCCTGCTGAAGA
TCCACCGGCCGGGCACCAAGGCCGACATCGACGACGCCCGGCAGCGGCTGAAGTGGGACGAGGCCTTCGTCCTCCAAGTC
GCGCTGGCCCGCCGCCGGCACGCCGACTCCCAGCTCCCGGCCGTCCCGCGCCGCCCCGCTCCCGGCGGCCTGCTCGACGC
CTTCGACGCCAAGCTCCCCTTCACCCTCACCGAGGGCCAGCAGACCGTCTCGAAGGAGATCTTCGACGACCTGGCCACCG
AACACCCCATGCACCGCCTCCTGCAGGGCGAGGTCGGCAGTGGGAAGACGATGGTGGCGCTGCGGGCCATGCTCGCCGTC
GTCGACTGCGGCGGGCAGGCCGCCATGCTGGCCCCCACCGAGGTGCTCGCCCAGCAGCACCACCGCTCCATCACCGAGAT
GATGGGCGAGCTCGCCGAAGGAGGGATGCTCGGCGGCTCCGACCAGGGCACCAAGGTCGTGCTGCTCACCGGCTCCATGG
GGATGCCCGCGCGCCGCCAGGCCCTGCTCGACCTGGTCACCGGCGAGGCCGGCATCGTGATCGGCACGCACGCGCTCATC
GAGGACAAGGTGCAGTTCCACGACCTCGGCCTGGTCGTGGTCGACGAACAGCACCGCTTCGGCGTGGAGCAGCGCGACGC
GCTGCGGTCCAAGGGGAAGCAGCCCCCGCACCTGCTGGTGATGACCGCGACCCCGATCCCGCGCACGGTCGCGATGACCG
TCTTCGGGGACCTGGAGACCTCCGTCCTCGACCAGCTGCCCGCCGGCCGCTCCCCGATCGCCACCCACGTCGTACCGGCC
AAGGACAAGCCGCACTTCCTGACCCGCGCCTGGGAGCGCGTACGGGAGGAGGTCGGGAACGGGCACCAGGCGTACGTGGT
GTGCCCGCGGATCGGCGACGGCGAGGACGACCCGAAGAACCCGAAGAAGAAGACCGCCGAGGACGACGGCGAGAAGCGGC
CGCCGCTGGCCGTCCTGGAGATCGCCGAGCAGCTGACCCGGGGGCCGCTCGCCGGGCTGTCGGTGGAGGTGCTGCACGGC
CGGATGGACCCGGCCGACAAGGACGACGTCATGCGCCGCTTCGCCGCCGGCGAGGTCAAGGTGCTGGTCGCCACCACCGT
CATCGAGGTCGGCGTGAACGTCCCGAACTCCACGGTCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCCCAGCTCC
ACCAGCTGCGCGGCCGCGTCGGCCGCGGCTCCGCGCCGGGCCTGTGCCTGCTGGTCAGCGAGATGCACGAGGCGAGCCCC
GCCCGGGCCCGGCTCGCCGCGGTCGCCGCCACCCTGGACGGATTCGAGCTCTCCCGGATCGACCTGGAGCAGCGCCGCGA
GGGCGACGTGCTGGGCCAGGCCCAGTCGGGCGTGCGGTCCTCGCTGCGCATGCTCGCGGTCATCGAGGACGAGGAGGTCA
TCGCCCAGGCCCGCGAGGAGGCCGCCCGCGTGGTCGCCGCCGACCCGGAACTGGAGCGGCTGCCGGGCCTGAGGAGCGCG
CTGGAGGCCCTGCTGGACACCGAGCGGGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(651-712)

DEAD/DEAH box helicase (DEAD)

(298-450)

Helicase conserved C-terminal domain (Helicase_C)

(548-623)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(66-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.737

94.701

0.367