Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG299_RS11885 Genome accession   NZ_CP130720
Coordinates   2684928..2686037 (-) Length   369 a.a.
NCBI ID   WP_266636157.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2679928..2691037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS11860 - 2680306..2680392 (+) 87 WP_311318651.1 putative leader peptide -
  OG299_RS11865 (OG299_11875) - 2680454..2681017 (+) 564 WP_327361481.1 cysteine dioxygenase -
  OG299_RS11870 (OG299_11880) - 2681008..2681400 (+) 393 WP_327364505.1 rhodanese-like domain-containing protein -
  OG299_RS11875 (OG299_11885) - 2681643..2684183 (-) 2541 WP_327361482.1 FtsX-like permease family protein -
  OG299_RS11880 (OG299_11890) recX 2684280..2684924 (-) 645 WP_266636155.1 recombination regulator RecX -
  OG299_RS11885 (OG299_11895) recA 2684928..2686037 (-) 1110 WP_266636157.1 recombinase RecA Machinery gene
  OG299_RS11890 (OG299_11900) - 2686348..2687172 (+) 825 WP_327361483.1 TIGR04222 domain-containing membrane protein -
  OG299_RS11895 (OG299_11905) - 2687238..2687999 (+) 762 WP_266636161.1 Clp protease N-terminal domain-containing protein -
  OG299_RS11900 (OG299_11910) - 2687950..2689074 (-) 1125 WP_266636432.1 AI-2E family transporter -
  OG299_RS11905 (OG299_11915) - 2689288..2689482 (-) 195 WP_327361484.1 DUF3046 domain-containing protein -
  OG299_RS11910 (OG299_11920) - 2689565..2690518 (+) 954 WP_327361485.1 hypothetical protein -
  OG299_RS11915 (OG299_11925) - 2690523..2690831 (-) 309 WP_053790491.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 38877.30 Da        Isoelectric Point: 6.8973

>NTDB_id=787249 OG299_RS11885 WP_266636157.1 2684928..2686037(-) (recA) [Streptomyces sp. NBC_01296]
MAGTDREKALDAALAQIERQFGKGAVMRLGDKPNDPIEVIPTGSTALDIALGVGGLPRGRVIEVYGPESSGKTTLTLHAV
ANAQKAGGTVAFVDAEHALDPEYAKALGVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
RKIKEKLGVGVRKDAAADGAAAGAPAEAAAVPAPASKAKTTAKAAVAKS

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=787249 OG299_RS11885 WP_266636157.1 2684928..2686037(-) (recA) [Streptomyces sp. NBC_01296]
ATGGCAGGCACCGACCGCGAGAAGGCTCTCGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGTGCGGTCAT
GCGCCTCGGCGACAAGCCGAACGACCCCATCGAGGTCATCCCCACCGGGTCGACCGCGCTGGACATCGCCCTCGGCGTCG
GCGGGCTGCCCCGCGGCCGCGTGATCGAGGTGTACGGCCCGGAGTCCTCCGGTAAGACGACCCTGACCCTGCACGCCGTG
GCCAACGCACAGAAGGCCGGCGGCACCGTCGCCTTCGTGGACGCCGAGCACGCGCTCGACCCCGAGTACGCGAAGGCCCT
CGGCGTCGACACCGACAACCTCATCCTGTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCGTGGACATGCTCGTCC
GCTCCGGTGCCCTCGACCTGATCGTCATCGACTCCGTGGCGGCCCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGGCTCCAGGCCCGCCTGATGAGCCAGGCGCTCCGTAAGATCACCGGTGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCGCCGGAGACCACCACCGGTGGCCGCG
CGCTGAAGTTCTACGCCTCCGTGCGCCTCGACATCCGCCGTATCGAGACCCTCAAGGACGGCACGGACGCGGTCGGCAAC
CGTACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTGCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGACAGGGCAAGGAGAACGCCCGCAACTTCCTGAAGGACAACCCCGACCTCGCCAACGAGATCGAG
CGGAAGATCAAGGAGAAGCTGGGCGTGGGCGTGCGCAAGGACGCCGCCGCCGACGGGGCGGCCGCCGGCGCGCCTGCCGA
GGCCGCGGCCGTGCCCGCCCCCGCATCGAAGGCCAAGACGACGGCCAAGGCCGCCGTCGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.615

88.076

0.604
  recA Vibrio cholerae strain A1552

63.506

94.309

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.506

94.309

0.599
  recA Staphylococcus aureus strain ATCC 12600

67.791

88.347

0.599
  recA Neisseria gonorrhoeae MS11

67.485

88.347

0.596
  recA Neisseria gonorrhoeae strain FA1090

67.485

88.347

0.596
  recA Acinetobacter baumannii D1279779

68.111

87.534

0.596
  recA Acinetobacter nosocomialis M2

67.802

87.534

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

88.347

0.593
  recA Acinetobacter baylyi ADP1

67.492

87.534

0.591
  recA Ralstonia pseudosolanacearum GMI1000

69.329

84.824

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

64.742

89.16

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.417

88.347

0.569
  recA Helicobacter pylori strain NCTC11637

64.615

88.076

0.569
  recA Helicobacter pylori 26695

64.615

88.076

0.569
  recA Streptococcus pyogenes NZ131

63.03

89.431

0.564
  recA Streptococcus mutans UA159

61.934

89.702

0.556
  recA Streptococcus thermophilus LMD-9

61.934

89.702

0.556
  recA Streptococcus thermophilus LMG 18311

61.934

89.702

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

89.16

0.553
  recA Streptococcus mitis NCTC 12261

61.631

89.702

0.553
  recA Streptococcus mitis SK321

61.631

89.702

0.553
  recA Lactococcus lactis subsp. cremoris KW2

61.631

89.702

0.553
  recA Glaesserella parasuis strain SC1401

63.043

87.263

0.55
  recA Streptococcus pneumoniae R6

61.027

89.702

0.547
  recA Streptococcus pneumoniae R36A

61.027

89.702

0.547
  recA Streptococcus pneumoniae Rx1

61.027

89.702

0.547
  recA Streptococcus pneumoniae D39

61.027

89.702

0.547
  recA Streptococcus pneumoniae TIGR4

61.027

89.702

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

86.721

0.518