Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG736_RS30860 Genome accession   NZ_CP130718
Coordinates   6843569..6845800 (+) Length   743 a.a.
NCBI ID   WP_327185269.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6838569..6850800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS30855 (OG736_30855) - 6841545..6843401 (-) 1857 WP_327185268.1 HSP90 family protein -
  OG736_RS30860 (OG736_30860) recG 6843569..6845800 (+) 2232 WP_327185269.1 ATP-dependent DNA helicase RecG Machinery gene
  OG736_RS30865 (OG736_30865) rsmD 6845955..6846539 (+) 585 WP_327185270.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG736_RS30870 (OG736_30870) coaD 6846566..6847045 (+) 480 WP_314219165.1 pantetheine-phosphate adenylyltransferase -
  OG736_RS30875 (OG736_30875) - 6847156..6848253 (+) 1098 WP_327185271.1 ATP synthase F0 subunit B -
  OG736_RS30880 (OG736_30880) - 6848406..6849059 (+) 654 WP_327187754.1 YceD family protein -
  OG736_RS30885 (OG736_30885) rpmF 6849062..6849235 (+) 174 WP_007493396.1 50S ribosomal protein L32 -
  OG736_RS30890 (OG736_30890) rnc 6849243..6850070 (+) 828 WP_230194553.1 ribonuclease III -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80247.91 Da        Isoelectric Point: 6.2615

>NTDB_id=787210 OG736_RS30860 WP_327185269.1 6843569..6845800(+) (recG) [Streptomyces sp. NBC_01334]
MDLVPALKEPLQQPLKSVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHSFA
SAKAPRGKGQRLEVTITDGSGRLQLVFFGSGVHKPHKDLLPGTRAMFSGKVSVFNRRLQLAHPAYELLRADTEESVETWA
GALIPLYPATAKLESWKIGKAIQTVLPSAQEVLDPLPDSLRDGRGLVSLPEALLKIHRPQTKADIADARARLKWDEAFVL
QVALARRRHADAQLPAVPREPAADGLLTSFDARLPFTLTEGQQKVSKEIFDDLATDHPMHRLLQGEVGSGKTLVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGSERATKVVVLTGSMGTAARRQALLDLVTGEAGIVIGTHA
LIEDKVRFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLARAWERVREEVGNGHQAYVVCPRIGDDVDEPGSPKKAGAKKKSPEDEAEKRPPLAVLDIADQLAKGPLHGL
GVEVLHGRMPPDDKDAVMRRFAAGDTDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVS
EMPEASAARQRLDAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEVIAEAREEAARLVAADPELET
LPGLRTALDALLDEEREQYLDKG

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=787210 OG736_RS30860 WP_327185269.1 6843569..6845800(+) (recG) [Streptomyces sp. NBC_01334]
ATGGATCTCGTGCCCGCGCTGAAAGAACCACTGCAACAACCACTGAAGTCAGTGCTCGGCCCCGCCACCGCGAAGGTGAT
GGCCGAGCACCTCGGCCTGCATACCGTCGGCGACCTCCTGCACCACTACCCCCGCAGATACGAGGAGCGCGGCCAGCTCA
CCCACCTCGCCGACCTCCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACAGCTTCGCC
TCGGCCAAGGCCCCGCGGGGCAAGGGCCAGCGCCTGGAGGTGACCATCACCGACGGCAGCGGCCGGCTCCAGCTGGTCTT
CTTCGGCAGCGGCGTCCACAAACCCCACAAGGATCTCCTGCCGGGCACGCGCGCGATGTTCTCGGGCAAGGTCTCGGTCT
TCAACCGCCGCCTCCAGCTGGCCCATCCGGCCTACGAACTGCTGCGGGCCGACACCGAAGAATCGGTCGAGACCTGGGCC
GGCGCCCTCATCCCGCTCTACCCCGCCACCGCGAAACTGGAGTCCTGGAAGATCGGCAAGGCGATCCAGACCGTCCTGCC
CAGCGCGCAGGAGGTGCTCGACCCCCTCCCGGACTCGCTGCGCGACGGCCGCGGCCTGGTCTCCCTCCCCGAGGCCCTGC
TGAAGATCCACCGCCCCCAGACCAAGGCGGACATCGCCGACGCCCGCGCACGGCTGAAGTGGGACGAGGCGTTCGTCCTC
CAGGTCGCCCTCGCCCGTCGCCGCCACGCCGACGCCCAACTCCCGGCCGTCCCCCGCGAGCCCGCCGCCGACGGCCTGCT
GACCTCCTTCGACGCCCGTCTCCCCTTCACCCTCACCGAAGGCCAGCAGAAGGTCTCGAAGGAGATCTTCGACGACCTGG
CGACGGACCATCCGATGCACCGGCTGCTGCAGGGCGAGGTCGGTTCGGGCAAGACCCTGGTCGCCCTGCGCGCCATGCTC
GCCGTGGTCGACGCCGGCGGGCAGGCCGCGATGCTCGCCCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCGTCGT
CGAGATGATGGGCGAGCTGGCCGAGGGCGGCATGCTGGGCGGATCCGAGCGGGCCACCAAGGTCGTGGTGCTGACCGGGT
CCATGGGCACGGCCGCCCGCAGGCAGGCGCTGCTCGACCTCGTCACCGGCGAGGCCGGCATCGTGATCGGCACGCACGCG
CTGATCGAGGACAAGGTCCGCTTCCACGACCTCGGGCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGTGTCGAACAACG
CGACGCGCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTCGTCATGACGGCCACGCCCATCCCGCGCACCGTCGCCA
TGACGGTCTTCGGCGACCTGGAGACGTCCGTCCTCGACCAGCTCCCGGCCGGCCGCTCGCCCATCGCCAGCCATGTCGTC
CCGGCCGCCGACAAGCCGCACTTCCTGGCCCGCGCCTGGGAGCGGGTCCGCGAGGAGGTCGGCAACGGCCATCAGGCGTA
CGTGGTCTGCCCGCGCATCGGCGACGACGTCGACGAACCGGGGAGCCCGAAGAAGGCCGGAGCCAAGAAGAAGTCCCCCG
AGGACGAGGCCGAGAAGCGGCCGCCGCTCGCCGTCCTGGACATCGCCGACCAGCTCGCCAAGGGGCCCCTGCACGGCCTC
GGGGTCGAGGTCCTGCACGGCCGCATGCCCCCCGACGACAAGGACGCCGTCATGCGCCGTTTCGCCGCGGGCGACACCGA
CGTCCTGGTCGCCACGACCGTCATCGAGGTCGGCGTCAACGTCCCGAACGCCACCGCGATGGTGATCATGGACGCCGACC
GCTTCGGCGTCTCCCAGCTGCACCAGCTGCGCGGGCGCGTCGGCCGGGGCTCGGCGCCCGGACTGTGCCTCCTGGTCTCC
GAGATGCCGGAGGCGAGCGCGGCCCGCCAGCGCCTCGACGCCGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGGAT
CGACCTCGAACAGCGGCGCGAGGGCGACGTCCTGGGCCAGGCCCAGTCCGGCGCCCGCTCCAGCCTGCGCGTACTCGCGG
TCATCGAGGACGAGGAGGTGATCGCGGAGGCGCGCGAGGAGGCGGCCCGCCTGGTCGCCGCGGACCCGGAGCTGGAGACC
CTGCCCGGCCTGCGCACGGCCCTGGACGCCCTCCTGGACGAAGAGCGGGAGCAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(299-452)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)

Helicase conserved C-terminal domain (Helicase_C)

(559-630)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(658-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.177

94.482

0.361