Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG736_RS28520 Genome accession   NZ_CP130718
Coordinates   6324744..6325727 (+) Length   327 a.a.
NCBI ID   WP_327184943.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6319744..6330727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS28505 (OG736_28510) - 6321172..6322803 (+) 1632 WP_327184940.1 ABC transporter substrate-binding protein -
  OG736_RS28510 (OG736_28515) - 6322810..6323733 (+) 924 WP_327184941.1 ABC transporter permease -
  OG736_RS28515 (OG736_28520) - 6323726..6324736 (+) 1011 WP_327184942.1 ABC transporter permease -
  OG736_RS28520 (OG736_28525) amiE 6324744..6325727 (+) 984 WP_327184943.1 ABC transporter ATP-binding protein Regulator
  OG736_RS28525 (OG736_28530) - 6325720..6326796 (+) 1077 WP_327184944.1 dipeptide ABC transporter ATP-binding protein -
  OG736_RS28530 (OG736_28535) - 6326953..6329070 (-) 2118 WP_327184945.1 prolyl oligopeptidase family serine peptidase -
  OG736_RS28535 (OG736_28540) - 6329252..6329446 (+) 195 WP_020127941.1 hypothetical protein -
  OG736_RS28540 (OG736_28545) mshB 6329511..6330425 (+) 915 WP_327184946.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36105.70 Da        Isoelectric Point: 6.1788

>NTDB_id=787202 OG736_RS28520 WP_327184943.1 6324744..6325727(+) (amiE) [Streptomyces sp. NBC_01334]
MLLEVRDLHVEFRTRDGIAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQAIMGILDVPPGRITGGEILFRGKDLLRFKE
EERRKVRGAEMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSRKDARNKAVELMDRVRIPGARERVRDYPHQFSGGMRQ
RIMIAMAMALEPALIIADEPTTALDVTVQAQVMDLLAELQREYHMGLILITHDLGVVADVADRIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLMHIPPGCAFNPRCPMAQDVCRSDVPPLYEVDESDADRTSACHF
WRECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=787202 OG736_RS28520 WP_327184943.1 6324744..6325727(+) (amiE) [Streptomyces sp. NBC_01334]
ATGCTGCTCGAAGTACGCGACCTGCACGTGGAGTTCCGCACCCGGGACGGGATCGCGAAGGCCGTCAACGGCGTCAGCTA
CGGCGTGGACGCGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACGTGCCGCCCGGCCGGATCACCGGCGGCGAGATCCTCTTCCGCGGCAAGGACCTGCTGCGCTTCAAGGAG
GAGGAACGCCGCAAGGTACGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCCCTGTCGTCCCTGAACCCCGTGCTGTC
GGTGGGCGACCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGGATGTCCAGGAAGGACGCACGGAACAAGGCCGTGGAAC
TGATGGACCGCGTCCGCATCCCCGGCGCCCGGGAACGGGTCAGGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCGATGGCGATGGCCCTGGAACCGGCGCTCATCATCGCCGACGAACCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTCGCGGAACTCCAGCGCGAGTACCACATGGGCCTGATCCTCATCACCCACGACC
TGGGCGTGGTCGCGGACGTGGCCGACCGGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGTCGGCCCCGGTCCACGAC
ATCTACAAGGCCCCGGCCCACCCCTACACCCGAGGCCTGCTCGACTCCATCCCGCGGCTGGACCAGAAGGGCCAGGAGCT
CTACGCCATCAAGGGCCTGCCGCCCAACCTCATGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCCC
AGGACGTGTGCCGTTCGGACGTACCCCCGCTGTACGAGGTCGACGAGTCCGACGCGGACCGCACGAGCGCGTGCCACTTC
TGGAGGGAGTGCCTGCATGGCTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

46.875

97.859

0.459
  amiE Streptococcus thermophilus LMD-9

46.875

97.859

0.459
  amiE Streptococcus salivarius strain HSISS4

46.562

97.859

0.456
  oppD Streptococcus mutans UA159

47.573

94.495

0.45