Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG736_RS24915 Genome accession   NZ_CP130718
Coordinates   5546279..5547688 (-) Length   469 a.a.
NCBI ID   WP_020132462.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5541279..5552688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS24890 (OG736_24880) - 5541527..5542186 (-) 660 WP_327184404.1 hypothetical protein -
  OG736_RS24895 (OG736_24885) - 5542171..5542713 (-) 543 WP_020132466.1 SigE family RNA polymerase sigma factor -
  OG736_RS24900 (OG736_24890) - 5543015..5543947 (-) 933 WP_327184405.1 A/G-specific adenine glycosylase -
  OG736_RS24905 (OG736_24895) - 5544208..5545050 (+) 843 WP_327184406.1 hypothetical protein -
  OG736_RS24910 (OG736_24900) disA 5545074..5546198 (-) 1125 WP_054241725.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG736_RS24915 (OG736_24905) radA/sms 5546279..5547688 (-) 1410 WP_020132462.1 DNA repair protein RadA Machinery gene
  OG736_RS24920 (OG736_24910) - 5547965..5549749 (+) 1785 WP_327184407.1 hypothetical protein -
  OG736_RS24925 (OG736_24915) - 5549840..5550655 (-) 816 WP_327187704.1 hypothetical protein -
  OG736_RS24930 (OG736_24920) - 5550790..5551722 (+) 933 WP_327184408.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49679.82 Da        Isoelectric Point: 7.7220

>NTDB_id=787195 OG736_RS24915 WP_020132462.1 5546279..5547688(-) (radA/sms) [Streptomyces sp. NBC_01334]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSALPIGQVDGRTATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVLEVADIGDALRVLPRSRRRDAPRDAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=787195 OG736_RS24915 WP_020132462.1 5546279..5547688(-) (radA/sms) [Streptomyces sp. NBC_01334]
ATGGCTGCCCGCACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGTCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTCCGTACGACGACGCCGGGGC
GCGTCACGACGTCCGCCCTGCCCATCGGCCAGGTCGACGGACGGACGGCCACCGCCCGCCCCACCGGCGTGCCCGAGCTG
GACCGTGTCCTCGGCGGCGGTCTCGTACCGGGCGCGGTCGTCCTGCTGGCCGGCGAGCCGGGCGTCGGCAAGTCGACCCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAACACCGCACGCTGTATGTGACCGGTGAGGAGTCGGCCTCCCAGG
TCCGCATGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCCGCCGAGACCGATCTGGCGGCCGTCCTG
GGTCACTTGGACGCGGTGAAGCCGTCACTGCTGATCATGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACGCTTC
TGGTGGGCCATGTCACGAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTCGAACACCTCGTGGACGTGGTGCTGAGCTTC
GAGGGAGACCGCCACGCGCGCCTGCGCCTGGTGCGGGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTGGGCTGCTT
CGAACTGCACGACGAGGGCATTACGGGCCTTGCCGACCCGAGCGGACTTTTCCTGACCAGGCGTGACGAACCGGTCCCGG
GTACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTACAGGCCCTCACCGTCGACTCGCAGATC
CCCTCGCCCCGCCGCACGACGTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCAA
GATCAGCGCGCTGGGCAAGCGGGACATCTACTCAGCGACGGTCGGCGGCGTGAAGCTCTCCGAACCCGCCGCGGACCTGG
CGATCGCCCTCGCCCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCGGAGGCACACCGCCTGGGCTTCACCCACGCGCTCGT
GCCGAGCGATCCCGGCAAGATCCCCGCGGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTCCTGC
CGCGCTCCCGTCGACGAGACGCCCCACGGGATGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409