Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG736_RS15240 Genome accession   NZ_CP130718
Coordinates   3381981..3383909 (+) Length   642 a.a.
NCBI ID   WP_327182923.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3376981..3388909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS15225 (OG736_15210) - 3378088..3378393 (+) 306 WP_057600990.1 hypothetical protein -
  OG736_RS15230 (OG736_15215) - 3378563..3380020 (+) 1458 WP_028806369.1 FGGY family carbohydrate kinase -
  OG736_RS15235 (OG736_15220) rcrP 3380248..3381981 (+) 1734 WP_327182922.1 ABC transporter ATP-binding protein Regulator
  OG736_RS15240 (OG736_15225) rcrQ 3381981..3383909 (+) 1929 WP_327182923.1 ABC transporter ATP-binding protein Regulator
  OG736_RS15245 (OG736_15230) - 3384003..3385283 (-) 1281 WP_327182924.1 RNA polymerase sigma factor -
  OG736_RS15250 (OG736_15235) dnaG 3385431..3387326 (-) 1896 WP_327182925.1 DNA primase -
  OG736_RS15255 (OG736_15240) - 3387485..3388750 (-) 1266 WP_327182926.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69454.80 Da        Isoelectric Point: 5.5660

>NTDB_id=787169 OG736_RS15240 WP_327182923.1 3381981..3383909(+) (rcrQ) [Streptomyces sp. NBC_01334]
MAGPMGRMMAGTGPDSHSLDFKVSGRRLLAQFKPERFTLYAMLACVTLSVGLSVVGPKILGKATDLVFAGIVGRQMPAGA
SKEQVLDSMRERGEGSVADMLRSTDFTPGKGIDFGSVGEVLLFALGVFLIAGLLMAVATRLVNRSVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTVIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQLASMANLVQSGVASAERVFELLDAEEQEADPVAAERPAELRGRVALE
GVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASGEVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAAGGAYARLYKAQFAQALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=787169 OG736_RS15240 WP_327182923.1 3381981..3383909(+) (rcrQ) [Streptomyces sp. NBC_01334]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGCACCGGTCCCGACAGCCACTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCGCCCAGTTCAAGCCGGAGCGGTTCACCCTCTACGCGATGCTGGCCTGCGTGACGCTGAGCGTCGGCCTCAGCG
TGGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGACGGCAGATGCCGGCCGGGGCG
AGCAAGGAGCAGGTCCTCGACTCGATGCGGGAACGCGGCGAGGGCAGCGTCGCCGACATGCTCAGGAGCACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGCTCGGTCGGCGAGGTCCTGCTGTTCGCGCTCGGGGTGTTCCTGATCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGGTCCGTCAACCGCACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTGCTGTCCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTGACCGTCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CACGCTGGTGAAGGTGTTCGGCCGCCAGGAGGAGTCGGCACAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGCGTCGCGTCGGGTTCCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGCTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCGGCCGAGCGGGTCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTGGCGGCCGAGCGGCCCGCGGAGCTGCGCGGGCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCCCTGACGGTGGAACCCGGCCACACGGTCGC
CATCGTCGGCCCGACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGGCGCA
TCACCCTCGACGGTGTCGACATAGCGAAGATGTCCCGCGACGAACTCCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGGGTGAGGTCACCCGCGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGCACCCTTCCCGACGGCTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTCTCCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACCATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGG
GCGCGCACACCGACCTGCTGGCGGCCGGCGGGGCCTACGCGCGGCTGTACAAGGCACAGTTCGCGCAGGCACTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.956

85.047

0.374